Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00237 ATGGCGAAAGAGCTTGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTTGATTTCTACTCCGAAGCCATACAGTTAGATCCAAACGACGCTCATCTATTCGCTGACAGAGCTCAGGCTCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAAAGCCATTCAGTTAAACCCTTCCTTGTCCAAGGCCTATCTCCGTAAAGGGACCGCTTGTATGAAACTAGAAGAATACCACACTGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTTGCGCAAGACGATTTAAGATTCTCCAAATTGATTCAAGAATGTGATCGCTGTATTGCAGAGGAATCAAATGGTCTTACTAGCGCCTTATCGTCAAATGGTTCCCACTTGAGCAATAGAAACGACGGGGTGACCAAAGAAGCTGAAGGAGACAGTTTGATTTCCCAAATCAATGAAGTCACACCAAACAGACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCGAAGGGAATATCAGCAAAAGATTTGGTTGTTGACTTCGGTGAACAGATTCTCAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTTCCAACCTCGATTGTTTGCAAAGGTAATACCCAACAACTGCAGAGTTGAGGTATTGTCGACCAAAATTGAAATTCGTCTTGCAAAAGCTGAACCTATTAATTGGACATCTTTGGAATATAGCAAGGATACACTACCCCCTAAAATAAACATGCCTATAGTTCAATCTGAAAGGCCTTCATACCCATCATCAAAACCAAGGAAAAAAGATTGGGATAAGTTAGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGACGCTGCTTTGAATAAATTGTTCCGCGATATTTACCAGAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGATGGCATGGAGCTGAAAAAATGGGAGTACTAA 1092 0.4249 MAKELEKKAKEAFFDDDFALAVDFYSEAIQLDPNDAHLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAAFAQDDLRFSKLIQECDRCIAEESNGLTSALSSNGSHLSNRNDGVTKEAEGDSLISQINEVTPNRPKYRHEYYQKPEEVVVTIFAKGISAKDLVVDFGEQILSVTIDVPGQDAYHFQPRLFAKVIPNNCRVEVLSTKIEIRLAKAEPINWTSLEYSKDTLPPKINMPIVQSERPSYPSSKPRKKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00237 363 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lapu2g00237 363 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Lapu2g00237 363 MobiDBLite consensus disorder prediction 265 288 - -
Lapu2g00237 363 SMART tpr_5 2 35 IPR019734 GO:0005515
Lapu2g00237 363 SMART tpr_5 36 69 IPR019734 GO:0005515
Lapu2g00237 363 SMART tpr_5 70 103 IPR019734 GO:0005515
Lapu2g00237 363 FunFam Protein SGT1 homolog 1 127 - -
Lapu2g00237 363 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lapu2g00237 363 MobiDBLite consensus disorder prediction 274 288 - -
Lapu2g00237 363 Pfam CS domain 166 241 IPR007052 -
Lapu2g00237 363 CDD p23_CS_SGT1_like 168 251 - -
Lapu2g00237 363 ProSiteProfiles CS domain profile. 162 251 IPR007052 -
Lapu2g00237 363 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Lapu2g00237 363 MobiDBLite consensus disorder prediction 343 363 - -
Lapu2g00237 363 ProSiteProfiles SGS domain profile. 272 363 IPR007699 -
Lapu2g00237 363 Pfam SGS domain 281 361 IPR007699 -
Lapu2g00237 363 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Lapu2g00237 363 Pfam Tetratricopeptide repeat 38 68 IPR019734 GO:0005515
Lapu2g00237 363 Gene3D - 163 254 IPR008978 -
Lapu2g00237 363 FunFam Protein SGT1 homolog A 160 264 - -
Lapu2g00237 363 SUPERFAMILY HSP20-like chaperones 159 261 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00237 Lapu-Chr2 1879671 1884156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00237 1 96 U-box Gene Family AT3G07370 33.333 5.75e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00237 K12795 - gmx:100194420 592.038