Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00230 ATGGAACAGAAAAGCATTTTGTTATCGGCGCTGAGTGTTGGGGTGGGCGTCGGAGTGGGGATTGGATTGTCTTCTGGGCAAGGCATTGGCAGATGGGGAGTTAACGGTAATTCATCCTCAAACGCCGTTACTCCGGAGAATCTCGAACACGAAATGCTACGACTAGTCGTGGATGGCAGAGAAAGCAAGGTCACTTTTGATCAATTCCCTTTTTATCTCAGGGAGCAGACAAGGGTGATGCTAACAAGTGCGGCTTATGTCCATTTGAAGCATGCGGAGGTTTCAAAATATACAAGGAATCTTGCTCCTGCAAGTCGGACTATCATGCTTTCAGGACCAGCAGAACTTTATCAACAAGTGCTTGCCAAGGCTTTAGCCCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATCTCAGTGACTTTTCATTGAAGATTCAGAATAGATATGGTTCTGCCAACAAACAATCTTCTTTCAAAAGGTCTACCTCAGAGACAACTTTGGAGCGGATATCCGACCTATTTGAATCATTTTCAATCTTTCCACAAAAGGAAGAGACTAAAGGGAAAATCCACAGGCAACGCAGTGGAGCGAACCTCCAGTCAATGGAGTCTGAAGGATTCTATAATCCTCCTAAGATTCGTAGGAATGCGTCGGCCTCTGCAAATATCGATAGCCTTGCTTTGCAAAGCAATCCTACAAATTCAGCCCCTCAGAAGAACATAACAACGAACTGGCCTTTTGATGAAAAGCTTCTTGTACAAACTCTTTACAAGGTTCTAGTCTATGTATCAAAAACCTATCCCATTGTTCTATATTTGCGGGATGTTGACAAGTTGTTGTATAGATCACAACGGATATATAACCTATTCCAGATAATGTTGAATAAACTACATGGACGAATTTTGATTCTTGGCTCACGAGTTTTGGATTCTGGTAGCGATTACAAAGAAGTGGATGAGAGACTTTCTTCCGTCTTCCCCTACAACATAGAAATCAGCCCCCCAGAAGATGAATCTTATTTTGTCAGCTGGAAGTCTCAATTCGAAGAGGACATGAAAATGATACAGACTCAGGATAATAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTTATTGTGATGACCTGGGTTCCATGTGTGTGGCAGATACAATGGCTTTCAGCAACTATATAGAAGAGATCGTCGTGTCAGCAATTTCTTATCATTTAATGAATAACAAAGATCCTGAATACAGAAATGGCAAACTAGTTATTCCTTGCAGCAGTTTGTCCCATGCATTGGGTATATTCCAGGAGGGGAAATTCAGCACAAGAGATTCATTAAAATTAGAAGCCCAGGCAGTTACGTCTGAGCCGAGAGAAGAAGGAGCTGTTGTGAAACCAGAAGCAACGTTAGAAAATCCTGCTCCCGAAATAAAGGCTGAAGGAGATACATCAACTTCAGTGGGAAAAACTGACGGTGAAAATGCAATTCCTGCATCAAAAGTTGAAGTTCCTCCCGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAGATTGGTGTAAAATTCTCTGATGTTGGTGCCTTAGATGAGACCAAAGAATCGCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTTTTTGGACCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAAGCTGGAGCAAGTTTCATCAATGTATCCATGTCTACGGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTTTGTTCACACTGGCAGCCAAGGTCTCCCCTACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGACAACGTACCAGAGTTGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAGTTTATGACACTTTGGGATGGACTAATGACAAATCCAGGCGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCGTTTGACCTAGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATAATGGTGGGGATGCCATGCGTGGAGAACAGGGAAAAAATTTTGAGGACTCTTTTGGCAAAAGAAAAAGTGGACGAGAAACTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATACAGCGGAAGTGATCTCAAGGAGAAAAGGCAGAAAGGTGTTGAAGAACAGAATAAAAATGTTCAAGAAGTACCGGGAGATCAATCTAAAGGAACAAATACCCAAGATGCTTCGGAAGCAAAAGAGGAAGCTCAACAGGAAAGAGTAATTTCCCTTAGACCCTTGAACATGCAAGACTTTAAAGAGGCCAAAAGCCAGCGACATGATAAGATTGCTTCATTTGACCATCATCTTGGAACGCAGGTTTCCGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAATGAATTGTATGGGGAAGGAGGTTCAAGGAAGCGAGAGCAATTATCTTACTTCCTGTGA 2538 0.4291 MEQKSILLSALSVGVGVGVGIGLSSGQGIGRWGVNGNSSSNAVTPENLEHEMLRLVVDGRESKVTFDQFPFYLREQTRVMLTSAAYVHLKHAEVSKYTRNLAPASRTIMLSGPAELYQQVLAKALAHYFEAKLLLLDLSDFSLKIQNRYGSANKQSSFKRSTSETTLERISDLFESFSIFPQKEETKGKIHRQRSGANLQSMESEGFYNPPKIRRNASASANIDSLALQSNPTNSAPQKNITTNWPFDEKLLVQTLYKVLVYVSKTYPIVLYLRDVDKLLYRSQRIYNLFQIMLNKLHGRILILGSRVLDSGSDYKEVDERLSSVFPYNIEISPPEDESYFVSWKSQFEEDMKMIQTQDNRNHIMEVLAANDLYCDDLGSMCVADTMAFSNYIEEIVVSAISYHLMNNKDPEYRNGKLVIPCSSLSHALGIFQEGKFSTRDSLKLEAQAVTSEPREEGAVVKPEATLENPAPEIKAEGDTSTSVGKTDGENAIPASKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTLWDGLMTNPGERILVLAATNRPFDLDEAIIRRFERRIMVGMPCVENREKILRTLLAKEKVDEKLDFKELATMTEGYSGSDLKEKRQKGVEEQNKNVQEVPGDQSKGTNTQDASEAKEEAQQERVISLRPLNMQDFKEAKSQRHDKIASFDHHLGTQVSASYAAEGAGMSELKQWNELYGEGGSRKREQLSYFL* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00230 845 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Lapu2g00230 845 Gene3D - 521 796 IPR027417 -
Lapu2g00230 845 MobiDBLite consensus disorder prediction 730 744 - -
Lapu2g00230 845 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 844 - -
Lapu2g00230 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 738 IPR027417 -
Lapu2g00230 845 Gene3D - 694 792 - -
Lapu2g00230 845 MobiDBLite consensus disorder prediction 449 497 - -
Lapu2g00230 845 SMART AAA_5 558 695 IPR003593 GO:0016887
Lapu2g00230 845 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Lapu2g00230 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 364 IPR027417 -
Lapu2g00230 845 MobiDBLite consensus disorder prediction 729 773 - -
Lapu2g00230 845 MobiDBLite consensus disorder prediction 748 762 - -
Lapu2g00230 845 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00230 Lapu-Chr2 1818000 1823534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00230 474 733 Calmodulin-binding Proteins AT3G56690 36.567 9.57e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00230 - - gmx:100783137 1331.62