Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00209 ATGTCCACCACCGCAACTACAACATCAGAAGAAGTGAGCAGCAACGAGTGGGAAGTGATACACATGAGCGAGCAAGAGGAGGATCTGATTTACAGGATGTACAAGCTAGTGGGGAACAAGTGGAATTTGATAGCTGGTCGCATTCCTGGTCGTAAAGCAGAAGAGATAGAGAGATTCTGGATTATGAGACACGCCCATGCTTTCTCTGTTACCACAAATCAAACTAAAGCCAAACATTCTTGA 243 0.4486 MSTTATTTSEEVSSNEWEVIHMSEQEEDLIYRMYKLVGNKWNLIAGRIPGRKAEEIERFWIMRHAHAFSVTTNQTKAKHS* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00209 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Lapu2g00209 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 21 65 - -
Lapu2g00209 80 Gene3D - 22 80 - -
Lapu2g00209 80 CDD SANT 22 60 IPR001005 -
Lapu2g00209 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Lapu2g00209 80 FunFam MYB-like transcription factor 21 63 - -
Lapu2g00209 80 SMART sant 18 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00209 Lapu-Chr2 1646019 1648550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00209 22 60 MYB Transcription Factor Family AT5G52600 61.538 1.02e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu2g00209 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00209 K09422 - gmx:100814431 127.872