Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00208 ATGGACGGAATGCAAGAAAGAAACTCACAGCTTGGAACTGATATTGGTTCCTCCTTATCAAAGCTGATATTAACAAGTGGCTCCAACACCCTGGACTCAATTTTCTCAAATTGTCCCCCAACAAACGCCGCCACCAGTAGCAACTGCGTGTTCGACTATTTAGAACCCTTTGGGTCTTCCGGGTTTGAGCCCTTGGGCTCTTCTGTCTACCTTCGCCAAAGGGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGGAACGGGAACGGGAACGGGTCTTTTCTTCCCACTTCCTTGGCAAACCCATCCATAAACTCTGTTTACACCAGTTCGTTGACTTCTTCTTTGACCAACCCTTGCAAGAAAAAGCTTTACAGGGGAGTGAGACAGAGACACTGGGGCAAATGGGTGGCCGAAATTAGACTACCCCAGAACAGGATGAGAGTGTGGTTGGGCACCTACGACACTGCCGAAGCCGCCGCTTATGCCTACGACCGCGCAGCGTATAAGCTACGTGGAGAGTACGCGCGTTTGAATTTCCCCAATTTGAAGGACCCAACAAAGTTGGGCTTCGGAGATTCCGCCAGATTGAACGCCTTGAAGAGCTCCGTCGACGCCAAAATCCAAGCCATATGCCAAAAGGTGAAAAGGGAGAGAGCCAAAAAGATCGCCGCCAAGAAGCTCAGTTCGGCCGCCGCTCAGACCAACCGCAAGCAGAACGAGAAGATCAACTCCTCTGCTTCCTCCTCCTCCTCCTCGCGGCCGCTGTCGCCGTCGTCGATATTTTGCGATAATTGGGCGAACGAGTTGTTCTCGCCGACCGTTTCGGAGGATGGGATTTGGAAGGGGGAGAATTCGCCGGCCTCGGTTTCCACGGAATGCCCAACGATGGTAACAGACGACGCAGAGTTCGAAGGTTGTTCTCTGGCGAGATTGCCTTCTTTCGATCCCGAGTTGATTTGGGAAGTTCTGGCCGTTTAA 981 0.5199 MDGMQERNSQLGTDIGSSLSKLILTSGSNTLDSIFSNCPPTNAATSSNCVFDYLEPFGSSGFEPLGSSVYLRQRDILQKFYQESRGNGNGNGSFLPTSLANPSINSVYTSSLTSSLTNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKIAAKKLSSAAAQTNRKQNEKINSSASSSSSSRPLSPSSIFCDNWANELFSPTVSEDGIWKGENSPASVSTECPTMVTDDAEFEGCSLARLPSFDPELIWEVLAV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00208 326 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Lapu2g00208 326 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
Lapu2g00208 326 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Lapu2g00208 326 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Lapu2g00208 326 MobiDBLite consensus disorder prediction 229 258 - -
Lapu2g00208 326 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Lapu2g00208 326 CDD AP2 123 183 IPR001471 GO:0003700|GO:0006355
Lapu2g00208 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 29 324 - -
Lapu2g00208 326 MobiDBLite consensus disorder prediction 227 258 - -
Lapu2g00208 326 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lapu2g00208 326 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Lapu2g00208 326 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00208 Lapu-Chr2 1636132 1637839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00208 13 325 AP2-EREBP Transcription Factor Family AT1G64380 45.143 4.97e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g00208 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00208 - - gmx:100785364 445.662