Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00201 ATGTTGTGTCTGGTAGTGTTGATCATGTTTCTTCTCCCTCTCAGAGGAGAACCAGCATGCGACACCGTCTCATGCGGTAAAATCAAAATTCAGTTTCCATTTGGTTTGAAACAAACTCAAACTAAAAGCTCTGCTCGGTGTAGCTATCCGAGATTCCAACTTTCCTGTGACAACCGTAACCGAACCATTCTGAGCCTCCCAGGTTCCGGGGATTTGGTGGTGAAAAGCATAAACTACGAGTCCCAAACCGTTAAGGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTTTTGCACAACTTGAGCCTTTCCCTGCACCCACCGTTCACGTTTGAAGCAACCGTTTACGACCTAACCTTCCTTCGTTGTCCTTCCAACGTAACACACTCCCTTCCATTCCCACCAATTTCGTGCCTCAAGTCCAACTCCTCCTCCTCGGTGACATTCTTGTGGTGGCCTCTCAGTGGTGGCACGTCACCGTGGAGTGACGAGTGTGAAGTGATATCCTCCGCCTTTGTTCCCATTCCAAATCCAGACACGACATCGTTTTTCATGCCTGATCTCAACAAGGATGTCGTGTTGAAGTGGAACGACCCCGCGTGTGGGGACTGTGCTGGTCGCGGCCAAGTGTGTGGGTTCACCGACGACACCAAAACTTTACAAGTTGGATGCTTCTTCTCTGGTCCTAACGAAAACCAAGGTCTTTCAAGAAGCGCGAAATATGGCTTAACGATCGGAGTGGGAATACCTGGACTGCTGTGTTTAACTGGGCTTTGCTGCTTTATGTGTAGTAAATTCGATGTGTACGCACATGGTCACCGGGCCAGGCCCAGCAGGGAGCTTCCAAGCACAATTACTACTCTTCCACGGTCGTCGTTCATAATGGGCGGCCTTAATGGGCCGGAGATCGAAAAATTCCCGAAGACTCTAATTGGGGACAGTAAGCGGTTACCGAATGGGAACGATAACACGTGTCCAATATGTCTGTCTGAATACGAGGCGAAGGAGACACTGAGGACCATACCTGCGTGCAACCATTATTTTCATGCACACTGCGTAGATGAGTGGCTGAAGATGAATGCCACGTGCCCCTTATGCAGAAATTCACCACATCCATCTTCTACCACCGTTACCCCTTCTTCTTCTTCTACTTCTTCTTCTTCAACTTCTATTTATTCCTCTTTCCCATAG 1191 0.4887 MLCLVVLIMFLLPLRGEPACDTVSCGKIKIQFPFGLKQTQTKSSARCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTVKVNDPEGCLPKRFLHNLSLSLHPPFTFEATVYDLTFLRCPSNVTHSLPFPPISCLKSNSSSSVTFLWWPLSGGTSPWSDECEVISSAFVPIPNPDTTSFFMPDLNKDVVLKWNDPACGDCAGRGQVCGFTDDTKTLQVGCFFSGPNENQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGHRARPSRELPSTITTLPRSSFIMGGLNGPEIEKFPKTLIGDSKRLPNGNDNTCPICLSEYEAKETLRTIPACNHYFHAHCVDEWLKMNATCPLCRNSPHPSSTTVTPSSSSTSSSSTSIYSSFP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00201 396 CDD RING-H2_EL5-like 325 367 - -
Lapu2g00201 396 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Lapu2g00201 396 SMART ring_2 325 366 IPR001841 -
Lapu2g00201 396 Pfam Ring finger domain 323 367 IPR001841 -
Lapu2g00201 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 372 IPR013083 -
Lapu2g00201 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 370 IPR046948 -
Lapu2g00201 396 Pfam Wall-associated receptor kinase galacturonan-binding 20 88 IPR025287 GO:0030247
Lapu2g00201 396 SUPERFAMILY RING/U-box 319 372 - -
Lapu2g00201 396 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00201 Lapu-Chr2 1570716 1575230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00201 20 377 C3H Transcription Factor Family AT2G46495 34.877 2.13e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00201 - - ahf:112732430 373.244