Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00181 ATGGGGTGCATCTGCTCAAAAGACTCCTCAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAGGAAAAAGAGTCGAACAAGTCTTCAGTACAACTGGTTGCTCCTTCTGTCTCAACTACACATTTAGATAGTAGCAGTAGCACGGATGGTTCGGTGCCCCGAATGGTTAATTCATCATCACAAGCAATTAGAGGGTCTGTCAAAGTGGCATCGGAGGATAAAAGCTACCACTTAGATGCCACAAAAAGCAACCTCCAGAGCCGCATGACAGTGAGTGGTGGTGTAGACGAAAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGTATATTACAGGAGAGCAAGTTGATTCCGGATGGCCAGTTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTTCCTCGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATCGTGGCTTTGAAGAAGGTTCGCTTTTCAAGTACAGATGCGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTTTGCGTCGACTTGACCATCCTAATGTCATGAAGCTCGAGGGTCTTGTCACGTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGTCTAGCAACTATACATGGCTTGAAGTTAACTGAAGCTCAGATAAAATGTTATATGCAGCAACTGCTTCGTGGACTTGAACATTGCCATAGTCGTGGTGTGCTGCACCGTGACATAAAGGGTTCAAATCTTCTAATTGACAACGATGGGAATCTTAAAATTGGAGATTTGGGTCTTGCAACAGTCTATGATCCTGAGAAAAAGGAGCCATTGACCAGCCGTGTTGTGACCCTGTGGTATAGGGCACCCGAGCTTTTGCTGGGTGCTACAGAGTATGGAGATGCAATTGACATGTGGAGTGTTGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCGATCATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAACTTTGTGGTTCGCCATCTGAAGAGTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACCCTTACGACCGCCAAGTTTCCGAAACATTTCAAAATCTTTCCTCCCCGGCATTGGCTCTTGTTGATAAGCTCCTAACAATAGAACCAGAAGATAGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGATCCCTCAAGTTTACCGAAGTTTTCACCAAGCAAAGAGTTTGATTCCAGGCGTCGAGATAAGGAAGCTTCAAGGAAAAACCCTGAAGCTGTTAGAGTACGTGCACCAGCATCTGTTTTGAGGGGAGCAGGAGATGCCAAGGGACTGAGTTCACCAGAATATAACCCTCAGGGAAATATGTCTATGCGGAGCAAACCAAATAATTCAATGAGCCGTCATAAATATAAACGCCAGGAGGATGAGGAATCCAACGAGATCGGTGAAGGAAGCAGAGTAAGTATACACGGTGGCTACACGCATTCCACAAATATGCGCAGCAGTGTAGCAGGATCATCTTCAGTGAGTAAGAGACCAGAGTCATCTTTGAAGAATCAGAGGACTCATGTGAATCATGCAACAGCAGATTTATGTACCTCTTCCGTTAAAAAGGAACCAGGCTCGGCTGCTCGAGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTGCTCTGGACCATTGATGCCTCCGGGTGGGAACCTTGATGACATGCTTCGAGAGCATGAGAGATTAATGCAAGATGTTTTCCGTAGTGTCAAAAAGGCCAATCCCTAA 1917 0.4502 MGCICSKDSSNKDKVDEYEKEKEREKEKESNKSSVQLVAPSVSTTHLDSSSSTDGSVPRMVNSSSQAIRGSVKVASEDKSYHLDATKSNLQSRMTVSGGVDERMPMMSRILSVQYITGEQVDSGWPVWLSSVAAEAIKGWVPRRADSFEKLDQIGQGAYSSVHKARDLETGKIVALKKVRFSSTDAESVRFMAREIYILRRLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATIHGLKLTEAQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNDGNLKIGDLGLATVYDPEKKEPLTSRVVTLWYRAPELLLGATEYGDAIDMWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRTKFPHATSFKPQHPYDRQVSETFQNLSSPALALVDKLLTIEPEDRGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDSRRRDKEASRKNPEAVRVRAPASVLRGAGDAKGLSSPEYNPQGNMSMRSKPNNSMSRHKYKRQEDEESNEIGEGSRVSIHGGYTHSTNMRSSVAGSSSVSKRPESSLKNQRTHVNHATADLCTSSVKKEPGSAARESTMGYMPKKNRIHCSGPLMPPGGNLDDMLREHERLMQDVFRSVKKANP* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00181 638 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Lapu2g00181 638 MobiDBLite consensus disorder prediction 1 73 - -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 511 527 - -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 9 32 - -
Lapu2g00181 638 FunFam probable serine/threonine-protein kinase At1g54610 135 230 - -
Lapu2g00181 638 ProSiteProfiles Protein kinase domain profile. 148 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00181 638 CDD STKc_CDK9_like 148 432 - -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 432 616 - -
Lapu2g00181 638 PANTHER CELL DIVISION PROTEIN KINASE 146 438 - -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 534 576 - -
Lapu2g00181 638 SUPERFAMILY Protein kinase-like (PK-like) 141 440 IPR011009 -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 33 71 - -
Lapu2g00181 638 Pfam Protein kinase domain 148 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00181 638 FunFam probable serine/threonine-protein kinase At1g54610 231 472 - -
Lapu2g00181 638 SMART serkin_6 148 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00181 638 MobiDBLite consensus disorder prediction 450 468 - -
Lapu2g00181 638 Gene3D Transferase(Phosphotransferase) domain 1 231 472 - -
Lapu2g00181 638 MobiDBLite consensus disorder prediction 491 507 - -
Lapu2g00181 638 Coils Coil 11 31 - -
Lapu2g00181 638 Gene3D Phosphorylase Kinase; domain 1 135 230 - -
Lapu2g00181 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00181 Lapu-Chr2 1414982 1418669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00181 140 471 Core Cell Cycle Gene Families AT5G10270 51.585 4.90e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu2g00181 Pkinase 4.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00181 K08819 - gmx:100791743 947.962