Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00170 ATGGATCAAGAACCAACGAGCACCATGCAACAATGTGTAATAGCCCCAACAACAGCATCATCAAAAACGACAACGACAACAACATCGTATCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGTGAGCCGGGGAAGAAAAGCAGAATATGGTTAGGGAGCTACGAGTCACCGGAGATGGCAGCAGCAGCCTATGACGCGGCAGCGTTGCACCTCAGAGGACGCGCCGCCAGGCTCAATTTTCCTGAATTGGCGGAGACACTGCCACGTCCGGCCAGCTCGAAATCCGAGGATGTACAGGTGGCAGCACAACAAGCGGCATTGAGGTTCACTAGGTCACCAACAACGTTACATGATAAAATATGTATGAATGAAAGCAGTAACAGTAACATTATAATTAACAATAACAATAGTGGTGCGGTTCCTGTGCGAGTGGGACTTTCAGCTACGCAAATTCAAGCTATAAATGAGTCTCCATTGGACTCACCAAAGATGTGGATGATGCAAATGGCAGAGACAGTGAGGTTTGGGTTTGGTGATGAGTACTCTACGATGATGCTGTCTTGTGATGGCAATGGTGATGATGATTATGCCATGGAGTTGAGTGGATGGGAAGAAATGCAGCATGAATCCTTATGGGACTCTCCTGAATATATGTGA 672 0.4717 MDQEPTSTMQQCVIAPTTASSKTTTTTTSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDAAALHLRGRAARLNFPELAETLPRPASSKSEDVQVAAQQAALRFTRSPTTLHDKICMNESSNSNIIINNNNSGAVPVRVGLSATQIQAINESPLDSPKMWMMQMAETVRFGFGDEYSTMMLSCDGNGDDDYAMELSGWEEMQHESLWDSPEYM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00170 223 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Lapu2g00170 223 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lapu2g00170 223 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lapu2g00170 223 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lapu2g00170 223 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lapu2g00170 223 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lapu2g00170 223 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lapu2g00170 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 174 - -
Lapu2g00170 223 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Lapu2g00170 223 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00170 Lapu-Chr2 1333322 1334152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00170 28 218 AP2-EREBP Transcription Factor Family AT1G71450 47.120 1.79e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g00170 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00170 - - pvu:PHAVU_002G036000g 344.739