Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00152 ATGGATGAGGGTAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAGCGATGGGAGGCACAGGGATAGGGAGAAGAGGGACCGTGAGCCCCGAAGACATGAAAGAGAGAGGAGTACTGATTCTGAAGACAAGTATGACAGAGACAGAGAGAAGCGCAAAGATAAAGATAAGGATGTGGATAGAGAAAGAGGTCGAGAGAAGAAAAGAGAAAGGAACAGAGATAGGGAAGACAGGGAGAGGACAGACAGAGTAAGGGAAAAAGACAAAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCAGGGAGAGAGAAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGTAAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAGGAAAGAGGATGGTGATTACAAGAAAAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGCAATCTGAGGAACGTGAAGGAAGCCCAAGAAAAAAGAGTGTTGGAGATGATTCAGATACCAAAGATGGAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTCCAAGAGTGGCAAGAACTAAGGAGGAAGAAAGAAGAAGCTGAAAGAGAAAAGCATGGTGAAGTAAGTGTTAATGAACCTGAGTCTGGAAAGACCTGGACTCTAGAAGGGGAATCTGATGATGAAGAAGGACCTGGTACCGAGAAGCATGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATATGGAACCTAAGGATGTGATGGTGGTAGACACTGATAATGGAACAATTGCATCTGATTTACAGGATGGAACTGCTGGTACACCGGAAGATGAGGAAGTAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCGATTTCTGATAAAGCCATTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCTTGGTGCACGGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATGCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAAGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATCGACTATGAACCATTCAAGAAATTTTTTTATATTGAAGTGAAGGAGATCTCAAAGATGAATCCTGAAGAAGCTGCAGTATACAGGAGGCAGTTGGAATTGAAGATACATGGAAAGGATGTGCCGAAGCCTATAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAAATGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGCTCAGGAAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGTCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAGTTTGCGAAGGTACTAGGTCTCAGATGTGTACCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCCGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGTAGTGGAAAAATAACCAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGTCCGGATCGTCAAACAGTTCTTTTCTCTGCAACTTTCCCCCGTCAGGTTGAAATTCTTGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGAAGGAGTGTTGTGAACAAAGACATATTACAGCTAGTTGAGGTGAGACCGGATAATGAAAGGTTCCTTCGACTCTTAGAAATATTAGGGGAATGGTATGAGAAAGGAAAGATTCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTTTGTTCAAGGATCTCCTCAGGCATGGTTATCCCTGCCTTTCTCTTCATGGGGCTAAGGACCAGACCGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACTAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGGCGCACTGGACGTGCCGGCCGAAAAGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGATTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTTGAGCAAGCGCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCCGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTTTTGCTCAGATTCTTGCTGCCACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCAAATGGTGGACTGCCTGTTTCTTTTCCATCTGTACTTGGTCTCCAGACCCCAACAGTCTTGCCTGGGACTGGGTTACCCCTTGCTGCAAATGATGGGGCAGCCCGAGCAGCACTAGCTGCTATGAACTTGCATCGTAACATAGAAAAAATACAATCAGAGGCCTTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACGCATAAGGAAACATTAGGCCCTATATCTGATTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAAATCCCAGGACCTGGAGAACGCAAACTCTACCTGTTCATTGAAGGTCCTACTGAGCAGTCTGTCAAGACAGCTAAAGCACAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGAAAATACTCTGTTGTGTAA 3399 0.4381 MDEGKHKSRKENHEVKDGDSKRSHRDRDRDRTGERGKDKSDGRHRDREKRDREPRRHERERSTDSEDKYDRDREKRKDKDKDVDRERGREKKRERNRDREDRERTDRVREKDKERERKEDKERIRERERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHRKEDGDYKKRERERSVSKPSRQSEEREGSPRKKSVGDDSDTKDGEKKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSVNEPESGKTWTLEGESDDEEGPGTEKHDTGMDVDEDDKPADMEPKDVMVVDTDNGTIASDLQDGTAGTPEDEEVDPLDAFMNSMVLPEVEKLNNAVTSISDKAIDIKAKDKGNEQSLGARSRKGSNKSIGRIMPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKFFYIEVKEISKMNPEEAAVYRRQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00152 1132 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Lapu2g00152 1132 CDD DEADc_DDX46 483 704 - -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 910 941 - -
Lapu2g00152 1132 CDD KH-I_AtRH42_like 1030 1131 - -
Lapu2g00152 1132 Coils Coil 227 264 - -
Lapu2g00152 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 876 IPR027417 -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 1 314 - -
Lapu2g00152 1132 Gene3D - 446 703 IPR027417 -
Lapu2g00152 1132 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 494 522 IPR014014 GO:0003724
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 280 314 - -
Lapu2g00152 1132 Coils Coil 110 157 - -
Lapu2g00152 1132 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Lapu2g00152 1132 SMART ultradead3 513 718 IPR014001 -
Lapu2g00152 1132 PANTHER RNA HELICASE 438 913 - -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 409 424 - -
Lapu2g00152 1132 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 703 IPR014001 -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 910 924 - -
Lapu2g00152 1132 CDD SF2_C_DEAD 715 845 - -
Lapu2g00152 1132 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 649 657 IPR000629 -
Lapu2g00152 1132 SMART helicmild6 755 836 IPR001650 -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 380 428 - -
Lapu2g00152 1132 Pfam DEAD/DEAH box helicase 519 690 IPR011545 GO:0003676|GO:0005524
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 325 344 - -
Lapu2g00152 1132 MobiDBLite consensus disorder prediction 1 272 - -
Lapu2g00152 1132 Gene3D - 704 878 IPR027417 -
Lapu2g00152 1132 FunFam probable ATP-dependent RNA helicase DDX17 456 706 - -
Lapu2g00152 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 705 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00152 Lapu-Chr2 1223372 1226770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00152 481 856 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 2.98e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00152 K12811 - gmx:100784306 1719.9