Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00140 ATGAAGCTGAAAACATACGCTGGTCTTAGTTTCATGGCAACTCTGGCTATTATATATCATGCATTTAACAGCAGGGGTCAGTTTTATCCGGCAATGGTGTATCTCTCAACTTCTAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGCTAAACGAGCAATCGTGGAGGGAGGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCAATGGTCACAGCGTTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATCGAGACCACTCCTTCAGTGCCGATGTTGTCGCATGTCCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGATAGCCTTTTCTTATACAGTTCTTTGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACCGTGTCAATTTTTGTAAAATATATTTTCTATGTTAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTACCTGGAACTCATTAGGGACTTACTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCGAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACCGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACGGCAGCTGTAGGACAGCAAGGATCTCAGGCAGATGGTCAACGGCAGGGAACTGGAACAGGCAACGAAAGCTCAGCTCAAAATGAGGCTACTGATAATTTGAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGTATGTTCTCCTGGGTACACTCTCCATCGTCCGGTGGCTGAATCTGCTAATACAGACAGTAGTGGAGGGCAGACTTCCCGTGAACAAACTCAAAGTCAGTTTTTTACTGTTGGTGGACCAACAAATGAATCCTTTCCTCCAATGCAACACTTCCATTTTCTACCTTCCCAACCACATGCAGCCCTTGTGAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCTCACGTGGAAGCTCATAGAAAACTCCTTCAATGCCAGATTCAGATGAAATTAGTAGTTGTAACACAAATCCCCCGCCCCCCACAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAAGACAAGGTCTGATAAAAGTGTAGATGAGGGCACATCGTCATCACATAGCAAAGGCAAGAGTGTTATTTCCTCGTCTGAATCTGGTCATGGTTATATTGAGGAGATTCAAGATGGAAAAGCATAA 1680 0.4292 MKLKTYAGLSFMATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGQQGSQADGQRQGTGTGNESSAQNEATDNLSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGYTLHRPVAESANTDSSGGQTSREQTQSQFFTVGGPTNESFPPMQHFHFLPSQPHAALVNYGKGFENDPNIPSSHVEAHRKLLQCQIQMKLVVVTQIPRPPQILQNQLEILQKTRSDKSVDEGTSSSHSKGKSVISSSESGHGYIEEIQDGKA* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00140 559 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Lapu2g00140 559 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 263 338 - -
Lapu2g00140 559 CDD RING-H2_synoviolin 288 329 - -
Lapu2g00140 559 SUPERFAMILY RING/U-box 271 335 - -
Lapu2g00140 559 SMART ring_2 291 328 IPR001841 -
Lapu2g00140 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Lapu2g00140 559 MobiDBLite consensus disorder prediction 339 376 - -
Lapu2g00140 559 PANTHER RING ZINC FINGER PROTEIN 1 494 - -
Lapu2g00140 559 MobiDBLite consensus disorder prediction 532 549 - -
Lapu2g00140 559 Pfam Ring finger domain 290 329 IPR001841 -
Lapu2g00140 559 MobiDBLite consensus disorder prediction 520 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00140 Lapu-Chr2 1129306 1135904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00140 1 545 C3H Transcription Factor Family AT3G16090 64.481 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00140 K10601 - gmx:100816441 926.776