Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00136 ATGGGAATACAACCCCAGCAAACATTTCGAGAGGAAGAGGAGGAGGAGCTGCCAGGCCGTGGAGCTACTATCTCGGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTTAGGTTAAACCATCTTGACATACACGGTGATGACGCTGCATCACAGGGTGCAATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTGTTGGTGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGAAGGACAACTTACAACGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAACCAATGGTGCTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATTCAGTGGAAGGGTCTTCCTCGTACAAGTCTAAGTGATATTGAAGAGCTAAAGACGGAACGTCTAGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCTTATTTGCAAGAGCTGGAGGACCAATACGTAGGTCTTCAGAAACTTATACAACGAAATGAGCAATTATATAGCTCTGGGAATGCTCCCAATGGCGGTGTATCTTTACCTTTCATTCTGGTGCAGACACGTCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTCTGTGAGAGATCTCAGAATGATAACACACCAGACAACCCTACAGATGGCGGGGAAGGTTCTAGCATGTCAAGTATGTATCATGCACAGGTTCCTACTTCAGTTTCAAACCCTCCAACTAGACCTCCTTCATCACCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1062 0.4444 MGIQPQQTFREEEEEELPGRGATISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAASQGAIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPTNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEDQYVGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTPDNPTDGGEGSSMSSMYHAQVPTSVSNPPTRPPSSPPLPGILKARVKNEH* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00136 353 MobiDBLite consensus disorder prediction 67 104 - -
Lapu2g00136 353 Pfam E2F/DP family winged-helix DNA-binding domain 104 184 IPR003316 GO:0005667|GO:0006355
Lapu2g00136 353 PIRSF Txn_factor_DP 6 353 IPR015648 GO:0005667|GO:0051726
Lapu2g00136 353 MobiDBLite consensus disorder prediction 298 353 - -
Lapu2g00136 353 FunFam Transcription factor-like protein DPB 96 189 - -
Lapu2g00136 353 MobiDBLite consensus disorder prediction 23 53 - -
Lapu2g00136 353 SMART DP_2 191 351 IPR014889 -
Lapu2g00136 353 SUPERFAMILY "Winged helix" DNA-binding domain 104 185 IPR036390 -
Lapu2g00136 353 MobiDBLite consensus disorder prediction 298 328 - -
Lapu2g00136 353 PANTHER TRANSCRIPTION FACTOR DP 22 333 IPR015648 GO:0005667|GO:0051726
Lapu2g00136 353 MobiDBLite consensus disorder prediction 1 53 - -
Lapu2g00136 353 SUPERFAMILY E2F-DP heterodimerization region 191 306 IPR037241 -
Lapu2g00136 353 CDD DP_DD 189 292 IPR014889 -
Lapu2g00136 353 Gene3D Transcription factor DP 190 322 IPR038168 -
Lapu2g00136 353 Gene3D - 96 189 IPR036388 -
Lapu2g00136 353 SMART E2F_TDP_2 101 184 IPR003316 GO:0005667|GO:0006355
Lapu2g00136 353 FunFam Transcription factor-like protein DPB 190 314 - -
Lapu2g00136 353 Pfam Transcription factor DP 192 324 IPR014889 -
Lapu2g00136 353 Coils Coil 200 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00136 Lapu-Chr2 1103014 1109151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00136 102 300 E2F-DP Transcription Factor Family AT5G02470 55.500 7.65e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu2g00136 DP 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00136 K04683 - gmx:100797603 571.622