LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu2g00129	ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGTAAGACCTACGACATGGTAGATGACCCCTCCACCGACTCGGTCGTGTCGTGGGGCGAAAACAACAACACTTTTGTTGTCTGGAACGTTCCCCAATTCGCCACGGACATCTTGCCCAAACATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTAGGAAGGTTGATCCAGATCAATGGGAATTTGCGAATGAAGGATTTTTAAGAGGGGAAAAACAACTTTTAAAAAGTATCAGTAGGCGGAAATCTGCTCATGTAAATGGTAGTCAACAGCCGTCTGAAGTGCATAAATCAGCTGTAAGAGCATGTGTTGAAGTTGGGAAATTTGGGCTTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTAAGACAGAAACAGCAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCAGAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAAGCATATCACCGGGGGTAATAAAAAGAGGAGGCTCCACAGGCAAGAAACGGATAATTTAGCCACCAACAGTCTCCATAATGGTCTTGATGGACACATAGTCAAGTACCAGAGTTCCATAAACGATGCTGCAAAATCATTATTTCGCCAGATATTGCAAATAAACAATTCTACAGCAACACAATCATCAAGTAAGAACCCTGATGTTTTCCTCATTGACGATGTTCCTTCTGCCATTGCGTCAGATAGCAGTAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACGGTTCCTCCTGTTTCTGAGCTGACGAGTATGGAAGTAGACTCGCAGTTTCCTGTCAATTGTATTCCCAGTATATCCGAGGTGCAATCTTCACCTGCTGTATTGGGTTTTTGTCAAAGTCAAGGAGTGGAGACAGAAAACGGTTTAGTGAATCATAATCCGAATGTTGTGGGGGCTGGTATTAGGAACGTGCGGGAGATAGATGTGTCATCTGTTTTGGATGGGCCGCACGCTGTAGAAACTGGTTATGCTTCACCCGATGCAGATGGAATTTCCCAACTCCCAGACATTGATGATGAGTTCTGGGAATTGTTTTTCAGGCCAAGTCCACTTACAGGAGACACTGAGGAAATTAAATGTAGCTCTCTTGGATGTGGTGACCAGGGTTTGCCTTCAGAAAGGGAAAATGAGCAGAAAAATGTTGATAAGATGCATCATGTTGACCATCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCCTAA	1398	0.4392	MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSISRRKSAHVNGSQQPSEVHKSAVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNKHITGGNKKRRLHRQETDNLATNSLHNGLDGHIVKYQSSINDAAKSLFRQILQINNSTATQSSSKNPDVFLIDDVPSAIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCIPSISEVQSSPAVLGFCQSQGVETENGLVNHNPNVVGAGIRNVREIDVSSVLDGPHAVETGYASPDADGISQLPDIDDEFWELFFRPSPLTGDTEEIKCSSLGCGDQGLPSERENEQKNVDKMHHVDHLTKQMGLLASKS*	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu2g00129	465	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	FunFam	Heat shock transcription factor 1	8	105	-	-
	Lapu2g00129	465	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	MobiDBLite	consensus disorder prediction	427	451	-	-
	Lapu2g00129	465	MobiDBLite	consensus disorder prediction	436	451	-	-
	Lapu2g00129	465	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu2g00129	465	Gene3D	-	8	105	IPR036388	-
	Lapu2g00129	465	SUPERFAMILY	"Winged helix" DNA-binding domain	12	104	IPR036390	-
	Lapu2g00129	465	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	293	IPR027725	-
	Lapu2g00129	465	Coils	Coil	131	158	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu2g00129	Lapu-Chr2	1045373	1048986	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu2g00129	12	465	HSF	AT5G16820	52.229	2.66e-141	412

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lapu2g00129		HSF_DNA-bind	1.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu2g00129	K09419		-	gmx:100793665	718.768