Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00125 ATGAGAACACCAAGCAGTGATGAAAGTGGTTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAATATTCTAGTGGATTACATTCAGAAGCATGGCCATGGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGACTAAGGTGGACTAATTACCTCAGACCTGATATCAAAAGAGGGAAATTCTCTGAAGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGGCAGCTATAGCATCTCATCTACCAGGTAGAACTGATAATGAAATAAAGAATTTGTGGAACACACATTTAAGGAAAAAGCTTTTGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTGATCACCTAAACCTTCTTACCAATCTACAACAGATATTGGCAGCTGCAAAAATTGTGAGCAGTTTCACAAACCCTTGTGACTTAAATAATGCTCTAAGGCTACACTCAGATGCCACACAACTAGCCAAATTCCAATTATTGCAAAACATGTTTCAAGTCACAGGTGCCACTCCTTCTTCTGCCTCAAGCTCTGACCCACTTAACCCTTTTGTACCATTAAACTCACTCCCAGATGGTTTTGTAAATGATGTTTTGGGGTTGAATCACTCTAATCTCCAGAACCTTTATGATGGTAATTCACTTTCTTCAATCCACCCCAATTTTCAAAACTTTGAGGCCCTTCAGCCAACACAAGATGGTTCCTTAAATGCTGATCCTTCACCATCAAATTCGCTTCCAAATCTGGTTTCTGCCTCCCCAGAACGTTCCCCAGTGAAGGAAACAGAAAACGTTCATGTAAACTCAAAGGAGTGTTCTAACCCTTGTTCCACCACCTTTGAGTTAACGTGGAGAGATTTCATGGATGAGGATGCAACAGAGACTTATTGGAAAGGTTTCATGGACCAACATTCTAACCAGACATGGTCAACAGTCTCATAA 987 0.4195 MRTPSSDESGLKKGPWSPEEDNILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNLWNTHLRKKLLQMGLDPVTHRPRTDHLNLLTNLQQILAAAKIVSSFTNPCDLNNALRLHSDATQLAKFQLLQNMFQVTGATPSSASSSDPLNPFVPLNSLPDGFVNDVLGLNHSNLQNLYDGNSLSSIHPNFQNFEALQPTQDGSLNADPSPSNSLPNLVSASPERSPVKETENVHVNSKECSNPCSTTFELTWRDFMDEDATETYWKGFMDQHSNQTWSTVS* 329
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00125 328 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu2g00125 328 FunFam Transcription factor MYB39 68 129 - -
Lapu2g00125 328 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu2g00125 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 238 - -
Lapu2g00125 328 FunFam MYB-related transcription factor 12 65 - -
Lapu2g00125 328 MobiDBLite consensus disorder prediction 246 287 - -
Lapu2g00125 328 CDD SANT 68 111 IPR001005 -
Lapu2g00125 328 Gene3D - 68 115 - -
Lapu2g00125 328 Gene3D - 10 66 - -
Lapu2g00125 328 MobiDBLite consensus disorder prediction 246 273 - -
Lapu2g00125 328 CDD SANT 15 60 IPR001005 -
Lapu2g00125 328 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lapu2g00125 328 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu2g00125 328 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lapu2g00125 328 SMART sant 65 113 IPR001005 -
Lapu2g00125 328 SMART sant 12 62 IPR001005 -
Lapu2g00125 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lapu2g00125 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu2g00125 Lapu-Chr2 1010712 1012051 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00125 2 317 MYB Transcription Factor Family AT5G16770 50.149 1.78e-100 297
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00125 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00125 K09422 - gmx:102660452 462.996