Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu2g00117 | ATGACTCAGAACACTGATATGAGACTTGAATCGGGAACTTGCAATGTGTGCTCGGCTCCTTGTTCATCTTGCATGCATCTCAATCATGCTCTCATGGGGTCAAAGGCCGAAGAGTTTTCTGATGAAAACTGTCGCACAGGAGCAGCTATTAATCAGTATTCTATGGATGAGGATAATGCATTTTCTCTTAGGAGCAGAGCTTGCGAAAGCTCACAACACACTCTCAGTGAAGCAAGTAATATGCAGAGTGTTATGTCAAGTCACAACGCTCTGTCTGAAAATGCCAAGAGTAGACAGATCATACCGAATAAGTATCAGGATTCCAAACATTTAGAAGGACATGATGACAACACTTCTTGTATTAGTAGAGCCAGTGATACTAATTTAGTGAATGGTAGCCATCAAAGGAATGAAGAGGGAATAATAATGCACGGGGAAAGGGATTCATGTTCTCGCATGTCAGAAAAATTGTCTGAATGCACCATTGAGAATTTTAGTTCATCATTGACCAAAGAGAGGGAACCTGTTGTTTCTGGTGAGAAATGTATTGTGGTTAAGGATGGCCTTATCGAGAGTACTTCCAACATTTCACTAAAAGTATGTCCAAAGTTAGAAGCAGATGCTGACATCTCTGAAGCCAACAATGGAGAACCTAAATGTAAAGTTCAAGATGGACAGTGCGAGAAAGCTGCAGACCTGGTTAAATCGCCTGCCAAGCAGGAAACTCAATCTGAAGATGAGAGTGATGAATCAGATGTTGTGGAACATGATGTAAAGGTGTGTGACATCTGTGGAGATGCTGGTCGTGAAGATCTACTTGCTATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACCTACTGCATGCGAGAAATGCTTGAGAAAGTCCCTGAAGGAGATTGGTTATGTGAAGAATGCAAAGATGCAGAGGAGAATGAAAATAAAAAACTGGATGTTGAAGACAAAAAAATTGCTGAAGTTGGTTCAACCTCACAAGTTTCTGGCAAAAGACTTTCTGATAATATTGAAGTAGCTCCAGCAGCAAAGAGACAAGCTCTTGAATCAAGCACGGGGTCACCAAAGACAGCTAGCCCCAAGAGATTAGTTCCACTGTCCCGAGAGTCTTCATTTAAGAGCTTAAATAAATCTAAAGTGAAGCCTGGTCTTCTGATACCTAGTCGAAACAACTCCGGTGGTAGTGACACAGAGATTGCTCGCTCTCCTTCCATTGGTCCCCGGGGTCAAACTCCAAAGGGTCTTCTGGTGAAATCTAATTCGTTCAACAACGTAAATTCCAAGCCAAGAGTCAAACTTGTCGATGAAGTTGTTCCCCAAAAACCAAAAGGGGGAATTGAACATGCTTCAAGGAACGTAGAGATGCCTGCTCGGATGACTGGCAAATCAACATTATTCAAATCTCCAAGTTTGGGGCGAACAAATGCAGCTGAATCAAAAGTTAAAATGCTTTCACCCAAGTCTGCAGCTATGCAGGATTTGAAAGGATCTAGACACTTAAAAGAATCAGGTGCATTTGACAGGAAATTTCCATCTAGGATTGATCGGCCTGTGGCTAGTTCTGTTGTTTCCAGTCCTAAGGGTGATCAAAGGCTCACACCTCGTGCTGAATCCAGTAAACCTTCAGCAATGAACAACAATCGAGAGTTGAAAGTTAATCAAGATGGAAAAACAAGTGGATTATCAAGGTCAATGAGCAATGTGAACCGTAAAAGTTCGGAGCCTCAAGTTATTTCAGAGAGAACATCAACCCGTGTTGATGAAGCTCAACAGGATGTTCTGCCTCGAACTCGAGAGACAGCTAATCAGATTGAGAAAAACAGGGATAATTCTAGTGATCGTGGAAGGCCAGCTGTTCCTACTGCTTTGAAAAGCCCATTCTGTCAAAAATGTAAGGAGTTTGGCCATGCTATAGAATGTTGCACCGCTGGCACTACACAAGAATCTGGTGCTGAAATATCTGTAACTACCTCAAGTAGTTCAAAAGATGAGATGCATAAAGGCAATATATTGAAAGCTGCTATCCAGGCTGCTTTACTTAGAAGGCCTGAAATTTACAAAAAGAAAGAAGTATCTAACCAAACTGATGAGGTTTCTACCTCGGGCACAGATTTGAATTGTGAAGTGACTTCAAGTGACCTAGTGTTGGTTTCCAGCACACTGAAGAATAGTATACCTGCTGAAGAAACCCCTGAACAACAGGAAATCCTTGAGAACTCTACCTCAGATTCTTCCAAATGTTCATCTGCCAATGACTTTAAGCAAGTCAAGTCTTGTCAGACTGATTTTCGATCCCAACCAGGAAAGTCGGGTTCCATTTGTCTTGCAGCTGGAAAATCTGTAGTGAGGGACGTGTCTGATAAAGCCGTGACATTGTCCATTGTTCCTTCAAAGATGCTGGCCTTTCCTGAATACGAATACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTCCTGACTTATATACTGGACTTCAGGCGCATTTATCCTCTTGTGCTTCTCCTAAGGTTGTTGGAGCAGTGAACAAGTTTCTACCCAGAATTTCCTTTAATGAAGCTTCCCGCTTGAGCTTGTGGCCTTCACAATTTCATCATGGTGGTGTTAGTGAAGATAATATAGCTCTATACTTCTTTGCCAGTGATGTTGAGAGTTACGAGAGACGCTACAAAGCTCTTTTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAAATTTTGAGGATGTTGAACTGCTGATATTCCCTTCTAGTCAGCTTCCTGAAAATTCACAGCGTTGGAATATGTTGTTTTTCTTGTGGGGCATATTTAGGGGAAGGAAGATCAACCATTCAGATTCTACAAAAAAGATTTGTATTCCCAGTTTGAATGTAATGCCTGTTGAGGAGAAATCTTCAACTGTTGTTTTAACTGTGCCTGAGACACATTGTTCACCAAAGTGCAAGGATGAAGAAACAATTGATTGTCATAGAGCATGCAATGCACTTGTCCCATCCACATCCACAGACCAACAACCGACTACCGGAGGTAGGAATATTGATGTCAATGACGAGACACATTTGGATTCAAAAGTAAACATAGAGAAGCTAGATAGTAGGATTGAATCAAAATCTACATCAAGGGCACCAACTAGCACGACTCTGTTATTTCAAGAAATGAACTCCACTGATTCGTCCCTGAAAGCTGGTGTACCTGAACAAGGACAGTGCAAAGAGTCTAAACCTCCTGAAGCTATGGGAAAAAGTGCGAGCAGTGGTATTGTGGAAGCAAAAACTGATTCTGATGTTTCTGTCAGGCAAGAGAAAACGTTGTCTGTGATTCCTTCTGAAAAAGGTGATGCAAGCAATATTACTAAGGATAAAATTTCTGAGAAAGTAAAAAGTGACGAAGAACAGCAAAAGCCTAAGGAGAAACAAAAAGAGCATCGTCACTACAGTATTGATTTGGAGGCAAATGTTGTCAATGAAGAAACAGGTGATGCAAGCGATTTGAGTAAGGATAAAAACTCAATAACAATTATTGGTAAGGAAGATCAGAAAGGGCCTATGAGGAAAGAGAGAGATGATCATTATATTGACTTGGAGGTAACACTTGAAGATGAAGAAACAGGTTTTGTAAGCAATGTATACGAGGATAAAATTTCAGAAAAAATGGATGTTGAGGAAGACTGGCGATGGCCTAAGAGGAAACGGAAAGATGATCACTATATTGACTTGGAGGCAACTTTTCAGGTAGACCCAAGTGTGGAAGGGATCAACTGTCAGCTACCTAATAATAAAGTTAAGCATGTAGATCTTTCTGACACAATTATGCAGGGTTCTGCTGTCAGTTGTCAGAAAATGCCATGGAGTCAGGGAAATGCCAAGTTAGAAGACACAGAAAGTTATGGCAAGAAGCCTAAGACAGGTTTCGGTGGGATCTATGGTTCTGGAGGTAGAGACTCTTTTAATGACAGTTTTACATCTCTTGGAAATGATCGCGGTTCCTGTTCTTCAGTTGAGGACAAAGGATGTGAGGAAGCTTGTGATGAGAAAATTATCCGGGAGGACTTGGGAACGATGGAAAGAACCTTCTTTCCAGTGGGCATACAGAATATTAGTAACTCACTATCTGTGCTGAATAGCTTGTCGACCAAAGGGGTGGGTGAGTATGATAAAGGATTTCAAGATGGGATTCCCAATCTAGAGCTCGCCTTAGGGGGCAAAACAAAAGCACCGCCGGCACCAGCTGCGCCTAAGGGTATGCTGCCTTTCTTAGTTGGGCCAGTAGACAGGCAAAATAACCGCCCAGATAGCTTGGGAGATGGGCAGGATGATGATGATGGTGTTGCTGCATCTCTTTCCCTCTCTCTGTCCTTTCCGTCTCCCAACAAGGAACACATTAAACCTGCAGAGCTTTTACCTGATGGGCAGCGTATGAACAACTCGTTTTTCCTTTTTGGGAGAAAATAA | 4476 | 0.4191 | MTQNTDMRLESGTCNVCSAPCSSCMHLNHALMGSKAEEFSDENCRTGAAINQYSMDEDNAFSLRSRACESSQHTLSEASNMQSVMSSHNALSENAKSRQIIPNKYQDSKHLEGHDDNTSCISRASDTNLVNGSHQRNEEGIIMHGERDSCSRMSEKLSECTIENFSSSLTKEREPVVSGEKCIVVKDGLIESTSNISLKVCPKLEADADISEANNGEPKCKVQDGQCEKAADLVKSPAKQETQSEDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPEGDWLCEECKDAEENENKKLDVEDKKIAEVGSTSQVSGKRLSDNIEVAPAAKRQALESSTGSPKTASPKRLVPLSRESSFKSLNKSKVKPGLLIPSRNNSGGSDTEIARSPSIGPRGQTPKGLLVKSNSFNNVNSKPRVKLVDEVVPQKPKGGIEHASRNVEMPARMTGKSTLFKSPSLGRTNAAESKVKMLSPKSAAMQDLKGSRHLKESGAFDRKFPSRIDRPVASSVVSSPKGDQRLTPRAESSKPSAMNNNRELKVNQDGKTSGLSRSMSNVNRKSSEPQVISERTSTRVDEAQQDVLPRTRETANQIEKNRDNSSDRGRPAVPTALKSPFCQKCKEFGHAIECCTAGTTQESGAEISVTTSSSSKDEMHKGNILKAAIQAALLRRPEIYKKKEVSNQTDEVSTSGTDLNCEVTSSDLVLVSSTLKNSIPAEETPEQQEILENSTSDSSKCSSANDFKQVKSCQTDFRSQPGKSGSICLAAGKSVVRDVSDKAVTLSIVPSKMLAFPEYEYIWQGVFEVHRNGKPPDLYTGLQAHLSSCASPKVVGAVNKFLPRISFNEASRLSLWPSQFHHGGVSEDNIALYFFASDVESYERRYKALLDHMIRNDLALKGNFEDVELLIFPSSQLPENSQRWNMLFFLWGIFRGRKINHSDSTKKICIPSLNVMPVEEKSSTVVLTVPETHCSPKCKDEETIDCHRACNALVPSTSTDQQPTTGGRNIDVNDETHLDSKVNIEKLDSRIESKSTSRAPTSTTLLFQEMNSTDSSLKAGVPEQGQCKESKPPEAMGKSASSGIVEAKTDSDVSVRQEKTLSVIPSEKGDASNITKDKISEKVKSDEEQQKPKEKQKEHRHYSIDLEANVVNEETGDASDLSKDKNSITIIGKEDQKGPMRKERDDHYIDLEVTLEDEETGFVSNVYEDKISEKMDVEEDWRWPKRKRKDDHYIDLEATFQVDPSVEGINCQLPNNKVKHVDLSDTIMQGSAVSCQKMPWSQGNAKLEDTESYGKKPKTGFGGIYGSGGRDSFNDSFTSLGNDRGSCSSVEDKGCEEACDEKIIREDLGTMERTFFPVGIQNISNSLSVLNSLSTKGVGEYDKGFQDGIPNLELALGGKTKAPPAPAAPKGMLPFLVGPVDRQNNRPDSLGDGQDDDDGVAASLSLSLSFPSPNKEHIKPAELLPDGQRMNNSFFLFGRK* | 1492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 1006 | 1022 | - | - | |
| Lapu2g00117 | 1491 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 332 | IPR013083 | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 120 | 135 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 730 | 754 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 1006 | 1025 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 349 | 430 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 1427 | 1449 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 528 | 589 | - | - | |
| Lapu2g00117 | 1491 | ProSiteProfiles | Zinc finger PHD-type profile. | 258 | 309 | IPR019787 | - | |
| Lapu2g00117 | 1491 | PANTHER | - | 258 | 970 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 1065 | 1153 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 590 | 618 | - | - | |
| Lapu2g00117 | 1491 | SUPERFAMILY | FYVE/PHD zinc finger | 247 | 309 | IPR011011 | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 108 | 137 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 232 | 253 | - | - | |
| Lapu2g00117 | 1491 | SMART | PHD_3 | 260 | 307 | IPR001965 | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 489 | 625 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 499 | 519 | - | - | |
| Lapu2g00117 | 1491 | MobiDBLite | consensus disorder prediction | 1122 | 1153 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu2g00117 | Lapu-Chr2 | 948507 | 957850 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu2g00117 | 257 | 318 | C2H2 Transcription Factor Family | AT3G01460 | 33.871 | 8.29e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu2g00117 | - | - | vun:114172977 | 2513.03 |