Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00080 ATGGAATCAGGCGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCTCGTCTCGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATCAGCGTGTCCTTTAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTTGGTCCTGAGACTATTCGAGTTTGCAATGGTTTAGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAAAGGGACAGAATAGAACGAATTAGGGGTAGTGGGGAAGGTATTGCTGCTGAGAAAGGTTTGGACCCGAGGGAAAGGAAGCGTAGTAAGTTGGATGTGTATGATTTTGATGAATATGATGGATTGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGATAATGGAGTTAGTCACGGAGGAGGAAGGTTTATGGGATCTGTGCATGCTGCTAGAAGTGGCATTGATCGGGAATTCAAAGCAGGTTCAAGTGGACGAGTTCTCGATAAGAAAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTATTTCCTGCGGATGATGTTGATCACAGTAGGTTCAAGATGAATAGGGATGGGACTCGGTTACCTGTATCCTCGCAGAGGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAGGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCGTCAGAACAATATTATGATCATCACAAGCCTGTAGAAAGCAGGCAAAGGTTGAAAACTGAAGAGCCTACCAAGAGGATGAAGACTGAAGAGACTGTCAAGAGGAATGTTCAAAGTCGTCCTTCATCATACTTGGAAACAAAACCTGTTGAGAAACCAAGATTACTCAAGAGGCCAGAGAAGAAACGGATAACATCCAGAAAATCCTTTTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGATGCATCACTGAATCCGGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAAAAATAATCTCTGAGGATGAGCATACACCTGTGCATGAAAAAGTCCCCACCACAGGAACGAAAGATGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGAGAATAAGGGAGATGCTGCTGACTTCAGGTTGGATTATAGACTATAGACCTCGACGGAACAGAGACTACCTGGATGCAGTTTACATTAACCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAACTGAATGAAGATGCTAATGAGGTCAAGGCCAAAGGGGACAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTGAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAAATATGATAGTGAAAGTGGTAATGAAAAAGAGCCTCAAAGAAAGAGATCTGCCAGCAACAAGCATGATATGAATAGCACGGATAGTGACAGCAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATCTCTGAAAATACCATTACCAGTGCTCGCACTAAAATTCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGAGGTGATTCTCATATACACGGACGGAAGAGTAAAAAACACGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTCCCATATGTGGGAAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAAAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCTGGAAGCAAAGTGCCAAAGCCATATCAAAATATATATTTGGAATCTGGTGTTTCTCTTCTACAATGCCAAATAAATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCGGTAGATATTGATGGTAATGATCCAAACGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAAATGCTTCCTCCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTAGGACTTCTGAAAAAGATGATGCATCTGTGTATGTCTTACGGACATGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTGCGGAGATGGATACCCATCCTAATAACTTGAATACTTCAAGCCTTTCTTTTTGTGGGAAAGAGTGTAAAGAGCTTTTTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCCGCTTGCAGGGGAATTACCCAGAGAGTAGAATGCAATTCGAAGTTGGCTATTGGACTGGCTGTGATGGACGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATACTGGATCAAACTTTAGCCGGTTGAGCTATGGTGGATTTTACACTGCTATTTTGGAAAGAGGAGATGAAATAATTGCTGCAGCGTCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCTATTGAATCAGCCCTTTGCTCTCTGAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACGGTTTTTGGCTTCACACATCTAGACGATTCACACAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTTGAACAAGGAAAACAGGAGGGTAATAAAACCTTATCTGTTTATGCTGTTTTTGTTCTGAGAAAATGGGAAATAGGTCAGATATGGGTTCTTTAA 3141 0.4212 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASSSRKLYESKKRANISVSFSDSGSSDELLIPPGRRLGPETIRVCNGLAASERGGSEISRKRDRIERIRGSGEGIAAEKGLDPRERKRSKLDVYDFDEYDGLGVENTRRRHLDDNGVSHGGGRFMGSVHAARSGIDREFKAGSSGRVLDKKKNSYGDRPSGLFPADDVDHSRFKMNRDGTRLPVSSQREKFNSDESIRVQGRNGVLKVMVNKKKVRGPSEQYYDHHKPVESRQRLKTEEPTKRMKTEETVKRNVQSRPSSYLETKPVEKPRLLKRPEKKRITSRKSFSSKDSKGDEGDSDNSDASLNPGIRNTETHKPAKKIISEDEHTPVHEKVPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWIIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNEDANEVKAKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKKYDSESGNEKEPQRKRSASNKHDMNSTDSDSNEEKLSSFIKQGSKSMKNKISENTITSARTKIQNATHHSSDGIEKSLFGGDSHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKVPKPYQNIYLESGVSLLQCQINAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGIASRTSEKDDASVYVLRTCNLCEKKYHDSCTAEMDTHPNNLNTSSLSFCGKECKELFEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVIDRRSGINLIRNVLYNTGSNFSRLSYGGFYTAILERGDEIIAAASIRLHGTKIAEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTVFGFTHLDDSHRQEMKSLNMMVFPGIDMLQKLLVEQGKQEGNKTLSVYAVFVLRKWEIGQIWVL* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00080 1046 SMART PHD_3 715 756 IPR001965 -
Lapu2g00080 1046 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Lapu2g00080 1046 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 552 579 - -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 251 389 - -
Lapu2g00080 1046 SUPERFAMILY FYVE/PHD zinc finger 700 757 IPR011011 -
Lapu2g00080 1046 Coils Coil 433 453 - -
Lapu2g00080 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 812 IPR013083 -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 518 537 - -
Lapu2g00080 1046 CDD NAT_SF 911 970 - -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 185 207 - -
Lapu2g00080 1046 Coils Coil 468 495 - -
Lapu2g00080 1046 CDD PHD4_NSD 716 755 - -
Lapu2g00080 1046 Pfam PHD-finger 716 758 IPR019787 -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 484 517 - -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 474 537 - -
Lapu2g00080 1046 PANTHER PHD FINGER PROTEIN 12 381 1022 IPR042163 GO:0003714|GO:0045892
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 317 335 - -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 251 287 - -
Lapu2g00080 1046 MobiDBLite consensus disorder prediction 349 389 - -
Lapu2g00080 1046 Pfam Tify domain binding domain 638 688 IPR032308 -
Lapu2g00080 1046 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 902 972 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00080 Lapu-Chr2 697700 714598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00080 4 1016 PHD Transcription Factor Family AT4G14920 48.842 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu2g00080 TDBD 2.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00080 - - gmx:102666194 1699.49