Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00065 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTTTCGATTCCATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCATTTTCGATTCTCTGCCACTTCCCGGTCGTGGAAGAAAAAGAACATCAAAATCATTTAGGATAGGAGTGAAAAAGAGTTCAGATGGACTAAAAACATTTGGAAGATCATTGAAGACTGGGGTGACTACTTGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGACCCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTTGCTTGTGATCCCTTCTTCTTTTATCTTCCGTATTTCAACCACAAATCATTTTGCCTCGCCATGGATAACGAGCTAGCCAGTTTTGCTGTCACATTGAGATCAGTATGCGATGCCATTTATCTCATTCGCATAAGTTTTCAGTTCCGCACTGCTTTCATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAGATTGCTAAGAGATATTTACGACGTTACTTCATCGTTGACTTCATTTCTGTGCTGCCTATACCACAGATTTTAGTGTGGAAATATCTTTACAGATCAGGACGTATAAAGGTATTGGAAACAAAAACGGCACTGTTGAGAATTGTGATCTTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACCGGCTCTTGCTGGTACTTGCTAGCTGTTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAGAGAAGTTGAAGGGTGCAATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGCCAGGGTATGACAGTTGGAGAAATGTTAGCGAAACTGTTCTGAAAACTCATTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCGTAGAAGTTTTTCCTAAATTCTGCTATTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACATATCCTGGAGAGGTTATGTTTTCCATTGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATATAAGTGGCTGAACACTCGTGGAGTAGATGAAGAGAGTATAGTTCAGAGTCTTCCGAAAGATCTCAGGAGAGATATCAAACGACATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGGTTAAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGAGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAACTATTAACGTGGGCATTGGATCCCAAATCTGCGGCTAACTTGCCATCATCAACAAGGACAGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAACACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCCATCTACATTCAAGCTGCATGGAGGCGGCATTCTAAGAGGAAGATGGTAGAACAACGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAGCTGTGATGATTCTGCAAGAGCCTTGGTCAAGCACTCTGAACCTGCTTTTTCCTCTTCTAGGCTTTGA 2115 0.417 MFDSGYKSQYIGGQKEKFVRLDDLDSNFSIPSSSSGMKKLRFIFDSLPLPGRGRKRTSKSFRIGVKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAMDNELASFAVTLRSVCDAIYLIRISFQFRTAFIAPSSRVFGRGELVIDPTKIAKRYLRRYFIVDFISVLPIPQILVWKYLYRSGRIKVLETKTALLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAVERNDTCWKNACREVEGCNTHFLYCANSNKHMPGYDSWRNVSETVLKTHCYVEDGSSEFSYGIFSQAIESDIVASVEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHSKRKMVEQRRREEEELYDSDYDSCDDSARALVKHSEPAFSSSRL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00065 704 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
Lapu2g00065 704 Gene3D - 112 435 - -
Lapu2g00065 704 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Lapu2g00065 704 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
Lapu2g00065 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 92 675 - -
Lapu2g00065 704 CDD CAP_ED 510 641 IPR000595 -
Lapu2g00065 704 Pfam Ion transport protein 110 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu2g00065 704 FunFam Cyclic nucleotide-gated ion channel 1 437 501 - -
Lapu2g00065 704 Gene3D Jelly Rolls 508 628 IPR014710 -
Lapu2g00065 704 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Lapu2g00065 704 SUPERFAMILY Voltage-gated potassium channels 102 432 - -
Lapu2g00065 704 Gene3D Helix hairpin bin 437 501 - -
Lapu2g00065 704 FunFam Cyclic nucleotide-gated ion channel 1 508 626 - -
Lapu2g00065 704 SMART cnmp_10 510 641 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00065 Lapu-Chr2 579107 582777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00065 6 686 Ion Channels AT1G15990 69.609 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00065 K05391 - gmx:100810453 1254.97