Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00062 ATGGAGCAAGCGGTGTCACTGATTGGTGCTCTCAACCTCGTTTCCCGCAACCTCCCTCTTCCCCCCGACCTCTTCCACACTGTTTCTTCTATCTATCACCGATCTATCCCTCTCAATTCCTCCGCAGATGAAGCGAATTCCTCACCGGAAGAAGATTTGTTGGCCGACCTTCAAGATGCGCTGTCGAACCAGCGTCCTAACTGCTGCTCCACTTCCAAATTGAACAAAGCTATGGAAAGCCGTTATCAGAGTCGGATTCAGCACCGCTTAACCCAGCTCCAAGAATTGCCTTCAAGCAGCGGAGAGGACCTACAGACAAGGTGCTTGCTTGAACTTTATGGACTAAAGCTAGCTGTGTTGCAGAGGAAGGTGCGAACTGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCCGACAGGCAATTGTTTGATTGGAGCATGATGCGGTTACGCCGTCCGCCATACGGTGTTGGAGATTCATTTGCCATGGATGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAAACTATCAAGATTGGAAGAGCAGGCGAAAAACCAAATAGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAATTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGCTGTCCAGGCATGGCATGGAAGGCAAAGACAACGAGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAGGCTTACATGAGAATGGTAAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGCAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACACTAAACAATCAGATGGCATTGAACCCTTGGAAGATTCTGAAACTGATTTACCTGAGTCAGATGGATTGAAGAATGGAATTTGTAAGGAATCACCTCTTGAGGAAGATGTGGATTTGATAGATTCTGACCACAATGGTGGTGATACCAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATTCTTGAAGGTGGAGAATTAAGACCATACCAGCTGGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATACTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACCATCTCGTTGATAGCACATCTTTTGGAACACAAGGGAGTGACTGGTCCTCACTTGATTGTGGCCCCGAAGGCTGTACTACCAAATTGGATCGCTGAATTCTCAACATGGCTTCCTAGCATCACAACTGTTCTTTATGATGGACGGCTAGATGAGAGGAAGGCGATGAAGGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCGTTTCTCAAGAAAATCAATTGGCACTACTTGATTGTGGATGAAGGGCATAGGTTGAAGAATCATGAATGTGCTCTAGCAAGAACCTTGGACTCTAGCTATCAAATTCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAAAACACTTTGCAGGAATTGTGGTCCCTCCTCAATTTTCTCCTTCCAAATATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGCGTTGATGCCTCTCTAACTGATGAAGAACAGTTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATACTGAGAAGGAAAAAAGACGAGGTAGAAAAATTTCTTCCTAGCAAATCTCAGGTTATACTCAAATGTGACCTGTCAGCGTGGCAGAAAGTGTATTATCAACAAGTCACTGATGTTGGCAGAGTTGGCTTAGACAACGGTTCTGGAAAATCAAAAAGCCTACAGAACATGACAATGCAACTCAGAAAATGTTGTAACCATCCCTATCTCTTTGTTGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGCTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTACATGATTTTAAATTTCTTAGACTGGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTCCATACTTCATGTTTCTATTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCGGATACTGTTATAATTTTTGATAGTGATTGGAACCCGCAAATGGATCAACAAGCTGAGGATAGAGCTCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTTATTCAGGCAGGGCTTTTTAACACTACTTCAACAGCACAAGACAGAAGGGAAATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACAGACGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAACGAAGGCAAAAGGAGAATTACAGAACTCGTCTCATTGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTTAATAAGGATGATAAAGTCAAAGTTTTTGACAGTGGTAGTGTTGTCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGCGATCTCCAATGGTTGAAGGCTGTGGAGAATGGACAGGACATATCTAAGCTTTCAGTCAGAGGAAAAAGAAGAGACCACCTCGCTGTTGACAACCATGCACAAGCTAGTGATGAGATGGGTACAGAAGAACTATTATTAGAGTTAAGGAATGACAGATCAAGTGTGGACACTTTTGACATGACTCCAGCCTCAAAGAGACTCAAGCCTCAAGAAATAAATTTCCAGAAACATGAAGACGAGGATCTCAGAGTTGATGGTTTGAAAGAGCAGATATTTTCCTGGAGTACTCACAGAAAGAAGAGATCAAGCTATCTTGGCCAGAGTTCATTCTCTGATAGTAGTAGAGGGCAGAATGCAAATGGAAGAGTAAACTGGAATTGA 3225 0.4242 MEQAVSLIGALNLVSRNLPLPPDLFHTVSSIYHRSIPLNSSADEANSSPEEDLLADLQDALSNQRPNCCSTSKLNKAMESRYQSRIQHRLTQLQELPSSSGEDLQTRCLLELYGLKLAVLQRKVRTDVSSEYWLNVKCAYPDRQLFDWSMMRLRRPPYGVGDSFAMDADDQIRKKRDAEKLSRLEEQAKNQIETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLANLGAAVQRQKDTKQSDGIEPLEDSETDLPESDGLKNGICKESPLEEDVDLIDSDHNGGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILEGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLLEHKGVTGPHLIVAPKAVLPNWIAEFSTWLPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKINWHYLIVDEGHRLKNHECALARTLDSSYQIQRRLLLTGTPIQNTLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDASLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNMTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRTRLIEEHELPDWVYSPLNKDDKVKVFDSGSVVGKRKRKEVVYADTLSDLQWLKAVENGQDISKLSVRGKRRDHLAVDNHAQASDEMGTEELLLELRNDRSSVDTFDMTPASKRLKPQEINFQKHEDEDLRVDGLKEQIFSWSTHRKKRSSYLGQSSFSDSSRGQNANGRVNWN* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00062 1074 PANTHER SNF2/RAD54 HELICASE FAMILY 114 982 - -
Lapu2g00062 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 553 IPR014001 -
Lapu2g00062 1074 Pfam SNF2-related domain 378 666 IPR000330 GO:0005524|GO:0140658
Lapu2g00062 1074 CDD SF2_C_SNF 677 810 - -
Lapu2g00062 1074 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Lapu2g00062 1074 FunFam Probable ATP-dependent DNA helicase CHR12 606 905 - -
Lapu2g00062 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 853 IPR027417 -
Lapu2g00062 1074 Gene3D - 606 905 IPR027417 -
Lapu2g00062 1074 MobiDBLite consensus disorder prediction 1051 1074 - -
Lapu2g00062 1074 FunFam Chromatin structure-remodeling complex protein SYD 366 609 - -
Lapu2g00062 1074 SMART ultradead3 371 564 IPR014001 -
Lapu2g00062 1074 MobiDBLite consensus disorder prediction 290 317 - -
Lapu2g00062 1074 Coils Coil 174 198 - -
Lapu2g00062 1074 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 953 IPR029295 GO:0042393
Lapu2g00062 1074 SMART SnAC_2 892 953 IPR029295 GO:0042393
Lapu2g00062 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Lapu2g00062 1074 Gene3D - 344 599 IPR038718 -
Lapu2g00062 1074 SMART helicmild6 715 799 IPR001650 -
Lapu2g00062 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 600 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00062 Lapu-Chr2 558942 566112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00062 672 827 RAD5 or RAD16-like Gene Family AT5G43530 36.709 9.73e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu2g00062 SNF2_N 4.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00062 - - gmx:100775993 1924.83