Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00055 ATGTTTCACACAAACATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAACACTACTTTCTCTGAGACTGACTTGGGAAAGCCCAGAGATGATGAATATGAGACCAAGTCTGGCACTGACACCATGGACGCTCCTTCCGGCGACGACCAAGACCCCAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGTCCAGCTACTCTTGGCGAAATGTCCTTCGACGAGCAGCACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGATTGATAGAATTTCAGGAATTGCGGCCAAGTATGTTGGAAAGCCGGTGACGTCTTCGTACTCCAACCTTTCTTCTCTCAACAACAATCACATGCCTGTTGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTATGGAGGTAGTGACCTGTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACTCTTTGTGGGTCCCCGGCAACCACCACTCCGAGATTCTAAATGAAGAAGACTATTTGAGGACTTTCCCTAGTAGAGGTTTAGGTCCCAAACCCTTGGGCTTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCAACTATGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTTCTTTCAACTGGAGTGGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAGTACGATCTCAAGAAGCCGAAGAAGGCCCTCTGGCTGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATCGAACATGTAGAAGTGGATGATAGAGCAGTGCATAGCATATATAAAACCCTAGTCAATTCCGGTCTCGCCTTCGGAGCTAAACGCTGGGTGGCTACATTGGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCGGCAGGGAACCTCTGTGTGATAACCAGTGCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCGGAGAGAATGGTTATTAGCTATTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACGCTATCCGCAACTGGATGTGATGACGTAAGGGTCATGACTAGAAAGAGCACTGACGAACCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTAATTTCCTACGCGATGAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGAGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGTCGTGATCCTGGCAACTGTGTCTCCCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGTAATATGCTGATACTTCAGGAGAGTTGCACTGATTCTACTGGGTCATACGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTAGTCTTGGGTGGAGGGGATCCAGACTATGTTGCCCTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAAGAAACGGTGGGTCAATACTTGATGTTGGATCTGGAGGTTCTCTACTCACAGTTGCATTCCAGATATTAGTTGATTCAGCCCCAACAGCAAAACTATCTTTGGGTTCAGTGGCCACGGTTAACAGTTTAATTAAGTGCACAGTTGAAAGAATAAAGGTTGCAGTGATACGTGACAACACCTAA 2184 0.473 MFHTNMFDSHPHMLDMSPHNTTFSETDLGKPRDDEYETKSGTDTMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPATLGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHSEILNEEDYLRTFPSRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFNFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGRNGGSILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNT* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00055 727 FunFam Homeobox-leucine zipper protein GLABRA 2 248 467 - -
Lapu2g00055 727 Gene3D - 48 134 - -
Lapu2g00055 727 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Lapu2g00055 727 FunFam Homeobox-leucine zipper protein HDG1 49 134 - -
Lapu2g00055 727 Pfam START domain 249 468 IPR002913 GO:0008289
Lapu2g00055 727 Gene3D - 313 469 IPR023393 -
Lapu2g00055 727 SUPERFAMILY Bet v1-like 489 718 - -
Lapu2g00055 727 SMART START_1 248 468 IPR002913 GO:0008289
Lapu2g00055 727 CDD START_ArGLABRA2_like 243 467 - -
Lapu2g00055 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 722 IPR042160 -
Lapu2g00055 727 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Lapu2g00055 727 ProSiteProfiles START domain profile. 239 471 IPR002913 GO:0008289
Lapu2g00055 727 Coils Coil 112 147 - -
Lapu2g00055 727 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
Lapu2g00055 727 MobiDBLite consensus disorder prediction 1 68 - -
Lapu2g00055 727 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Lapu2g00055 727 MobiDBLite consensus disorder prediction 26 41 - -
Lapu2g00055 727 SMART HOX_1 60 122 IPR001356 GO:0003677
Lapu2g00055 727 CDD homeodomain 61 119 IPR001356 GO:0003677
Lapu2g00055 727 SUPERFAMILY Bet v1-like 240 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00055 Lapu-Chr2 486074 490297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00055 1 725 Homeobox Transcription Factor Family AT4G21750 76.047 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu2g00055 START 5.1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00055 K09338 - gmx:100815499 1367.83