Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00052 ATGGCTACCCAACAATCTCTGCTAGAAAAGCCTAGAAATTCTGTTTCCAAAACTATCTGTTTAATCTTTTATGTAGCTGCTGTAATATGCTCATCAGCCTTTGCTGCTTCTTATTTCATCAAATCCAGTTCCTTCCTTAACCAATCCTCTCCTCAACATCTCTGTCATCGTGCACTTGATAACCCATCATGCTTAGCACATGTCGCAGAAGTGGTTCAAGGTCCCGTCTTGACCACCACAAAAGACTACAGATTCAATTTGTTTCAGTCTTTCTTGATGAAATCAACCTCACACATTCAGAGAGTTATGAACACAGCCACTTCCATCAAACTTAGGATTAACAGTCCCAAAGAGGAAGCAGCTTTGAACGACTGTGTGGAGCTGATGGACTTATCCATCGACAGAGTTCGGGACTCGATGGTGACTCTAGCAAAACAAACCACTGAGTCACAGCAAGACGCACACACATGGCTAAGTAGCGTGCTCACTAACCATGCAACTTGTTTGGATGGGTTAGAGGGGACAGCTCGTGCCCTTATGCAGGCTGAACTTGAGGACTTGATATCCAGAGCAAGAACCACTGTGGCCATGTTTGTTGCTGTTTTTCCTCCGAGGGTTGAACCAATAATTGACGAACCACTGAATGGGGAGTTTCCCTCATGGTTGAGCAGCAAGGATAGAAGGCTTTTGGAGTCTAGTGTTAGGGACATCAAGGCCAACGTTGTGGTGGCCAAGGATGGAAGTGGCAGGTTTAAGACTGTGGCCGAGGCTGTGGCATCTGCACCTGATAACGGTAAGACAAGGTATGTTATTTACGTGAAAAAAGGAACATATAAAGAGAATGTTGAGATTGGTAAGAAGAAGACGAACGTGATGCTCGTTGGAGATGGTAAGGATGTAACTGTAATTACTGGCAGCTTGAATTTTATTGACGGAACGACCACATTCAAGAGTGCCACTGTAGCTGCTGTGGGGGATGGATTTATAGGTCAAGACATATGGTTCCAGAATACAGCAGGCCCACAGAAGCACCAAGCAGTGGCTCTTCGCGTAGGTGCCGATCAATCCGTCATAAACCGATGTCGCATTGATGCCTTCCAAGACACTCTCTATGCCCACTCCAACAGGCAGTTTTACAGAGACTCCTTTATCACTGGCACCGTTGATTTCATATTTGGAAATGCAGCCGTTGTGTTTCAAAAGTGCAACCTGGTGGCCCGAAAGCCCATGAATAACCAGAAAAACATGGTGACGGCTCAAGGAAGAGAAGATCCAAACCAAAACACAGGAACTTCGATTCAACAATGTAACTTGATACCAAGTTCGGATCTTAAGCCTGTGGTAGGGTCCATCAAAACTTACCTAGGGCGCCCATGGAAGAAGTACTCGAGAACTGTTGTGATGCAGTCGACAATAGACAACCATGTTGACCCAACAGGATGGGCAGAGTGGGATGCGCAGAGTAAGGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAACAGTGGAGCTGGTGCTGGAACCAGCAAGAGAGTGAAGTGGCCTGGTTACCATATCATCACAAGTGCAGCAGAGGCCAACAAGTTCACAGTAACACAACTCATCCAGGGAAATGTTTGGTTGAAGAACACGGGGGTCAACTTCATTGAAGGCCTCTAA 1662 0.4579 MATQQSLLEKPRNSVSKTICLIFYVAAVICSSAFAASYFIKSSSFLNQSSPQHLCHRALDNPSCLAHVAEVVQGPVLTTTKDYRFNLFQSFLMKSTSHIQRVMNTATSIKLRINSPKEEAALNDCVELMDLSIDRVRDSMVTLAKQTTESQQDAHTWLSSVLTNHATCLDGLEGTARALMQAELEDLISRARTTVAMFVAVFPPRVEPIIDEPLNGEFPSWLSSKDRRLLESSVRDIKANVVVAKDGSGRFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGKDVTVITGSLNFIDGTTTFKSATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCNLVARKPMNNQKNMVTAQGREDPNQNTGTSIQQCNLIPSSDLKPVVGSIKTYLGRPWKKYSRTVVMQSTIDNHVDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSKRVKWPGYHIITSAAEANKFTVTQLIQGNVWLKNTGVNFIEGL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00052 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 185 IPR035513 -
Lapu2g00052 553 FunFam Pectinesterase 234 553 - -
Lapu2g00052 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Lapu2g00052 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Lapu2g00052 553 CDD PMEI-like_4 63 201 - -
Lapu2g00052 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 185 IPR006501 GO:0004857
Lapu2g00052 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Lapu2g00052 553 FunFam Pectinesterase 3 52 201 - -
Lapu2g00052 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Lapu2g00052 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Lapu2g00052 553 Gene3D - 234 553 IPR012334 -
Lapu2g00052 553 PANTHER PECTINESTERASE 28 543 - -
Lapu2g00052 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Lapu2g00052 553 NCBIfam pectinesterase inhibitor domain 86 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00052 Lapu-Chr2 455957 464633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00052 3 553 Carbohydrate Esterase AT1G11580 56.150 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00052 K01051 - gmx:100815836 983.4