Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00051 ATGGCTACCCAACAATCTCTGTTAGACAAGCCCAGAAAGCCCGTTTCCAAAACTATCTGCATACTCCTTTCTGTAATTGCAGTTCTAAGCTCATCGGCCTTTATTGCTTCTTATCTCTTCAAACCATCATCCCTTGTCTTCAACAATTCCTCCCTTCACCATGCCTGTGATCAGGCACTTGATACTACATCCTGCTTAGCACATGTCTCAGAAGTAACCCAGACCCACATATTGACCACAACAAAAGACCACAAATTCGATTTGCTCAAATCATTCCTAATAAAATACACCTCACACATAGAGAAAGTCATGGACACAACCAACGCTATCAAACTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGCGGGATTGTGTGGAGCTCATGGACTTGTCCTTGGACAGAGTTTGGAACTCGATGTTGTCTCTAACAAAACAAACCATTGAGTCGCAACAAGATGCACACACATGGCTAAGTAGCGTGCTAACTAATCATGCAACTTGCTTGGATGGATTAGAGGGGGCGGCTCGCAGTGTTATGGAGGTTGAACTTGAGGACTTGATATCTAGGGCAAGAACCTCTCTAGCCATGCTTGTTGCGACTGTTTTGCCTCCTAAGGTTGAACAGATAATTGATGAACCCCTGAATGGGGACTTTCCCTCATGGGTGAGCAGCAGGGATCGGAGGCTTTTGGAGAGTGCGGTTGGTGACATCAAGGCCAATGTTGTGGTGGCTCAAGATGGGAGTGGCAAGTTTAAGACTGTCACTGAGGCCGTGGCATCCGCACCAGACAACGGTAAGACAAGGTACGTTATTTATGTGAAAAAGGGAACATATAAAGAACATGTTGAAATTGGTAAGAAGAAGACAAACGTCATGCTCGTGGGTGACGGTATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACAACAACCTTTAACAGTGCCACAGTTGCGGCTGTGGGCGATGGATTTATAGGTCAAGACATATGGTTTCAAAACACAGCGGGAGCGGAGAAACACCAAGCAGTGGCTCTTCGCGTAGGCGCCGACCAATCCGTCATAAACCGTTGTCGCATTGATGCCTTTCAAGACACTCTCTACGCCCATTCCAACAGGCAGTTCTACAGGGACTCTTTCATCACTGGCACCATTGACTTCATTTTTGGAAATGCCGCTGTTGTCTTCCAAAAGTGCAACTTGGTGGCCCGAAAGCCATTGAGTAACCAGAAAAACATGGTGACGGCTCAAGGAAGAGAAGATCCAAACCAAAATACAGGAACTTCGATTCAACAATGTAACTTGATACCAAGTTCGGATCTTAAGCCTGTGGTAGGGTCCATCAAAACTTACCTAGGGCGCCCATGGAAGAAGTACTCGAGAACTGTTGTGATGCAGTCGACAATAGACAACCATGTTGACCCAACAGGATGGGCAGAGTGGGATGCGCAGAGTAAGGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAACAGTGGAGCTGGTGCTGGAACCAGCAATAGAGTGAAGTGGCCTGGTTACCATATCATCACAAGTGCAGCAGAGGCCAGCAAGTTCACAGTAACACAACTCATCCAGGGAAATGTTTGGTTGAAGAACACCGGGGTCAACTTCATTGAAGGCCTCTAA 1668 0.464 MATQQSLLDKPRKPVSKTICILLSVIAVLSSSAFIASYLFKPSSLVFNNSSLHHACDQALDTTSCLAHVSEVTQTHILTTTKDHKFDLLKSFLIKYTSHIEKVMDTTNAIKLRVNNPREEAALRDCVELMDLSLDRVWNSMLSLTKQTIESQQDAHTWLSSVLTNHATCLDGLEGAARSVMEVELEDLISRARTSLAMLVATVLPPKVEQIIDEPLNGDFPSWVSSRDRRLLESAVGDIKANVVVAQDGSGKFKTVTEAVASAPDNGKTRYVIYVKKGTYKEHVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIGQDIWFQNTAGAEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTIDFIFGNAAVVFQKCNLVARKPLSNQKNMVTAQGREDPNQNTGTSIQQCNLIPSSDLKPVVGSIKTYLGRPWKKYSRTVVMQSTIDNHVDPTGWAEWDAQSKDFLQTLYYGEYMNSGAGAGTSNRVKWPGYHIITSAAEASKFTVTQLIQGNVWLKNTGVNFIEGL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00051 555 CDD PMEI-like_4 60 201 - -
Lapu2g00051 555 Gene3D - 236 555 IPR012334 -
Lapu2g00051 555 PANTHER PECTINESTERASE 25 545 - -
Lapu2g00051 555 Pfam Plant invertase/pectin methylesterase inhibitor 51 191 IPR006501 GO:0004857
Lapu2g00051 555 FunFam Pectinesterase 3 53 202 - -
Lapu2g00051 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 198 IPR035513 -
Lapu2g00051 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 204 IPR035513 -
Lapu2g00051 555 SMART PMEI_2 47 198 IPR006501 GO:0004857
Lapu2g00051 555 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Lapu2g00051 555 ProSitePatterns Pectinesterase signature 1. 267 286 IPR018040 -
Lapu2g00051 555 NCBIfam pectinesterase inhibitor domain 27 178 IPR006501 GO:0004857
Lapu2g00051 555 Pfam Pectinesterase 242 541 IPR000070 GO:0030599|GO:0042545
Lapu2g00051 555 FunFam Pectinesterase 236 555 - -
Lapu2g00051 555 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00051 Lapu-Chr2 455899 457832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00051 3 555 Carbohydrate Esterase AT1G11580 56.228 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00051 K01051 - gmx:100815836 932.554