Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00050 ATGAATCTTATCGCTGTTATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATAACTCTTGAGGTGGAGAGTTCCGACACCATCGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAACGTCTGATATTCGCCGGGAAGCAACTGGAGGATGGTCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTGGTCCTCCGTCTCCGTGGAGGAATGCAGATATTCGTGAAGACCCTCACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCAGACACCATTGACAACGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGACTCAGGGGTGGCATGCAGATTTTTGTGAAGACCTTGACTGGGAAGACCATCACTCTCGAGGTTGAGAGTTCTGACACCATTGACAATGTCAAGGCCAAAATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGAGGCTGATATTCGCAGGGAAGCAGTTGGAGGATGGGAGGACCCTTGCTGATTACAATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTGCGTCTTCGTGGTGGTTTTTAA 708 0.5155 MNLIAVMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00050 235 PANTHER UBIQUITIN 83 162 - -
Lapu2g00050 235 CDD Ubl_ubiquitin 7 82 - -
Lapu2g00050 235 SUPERFAMILY Ubiquitin-like 6 82 IPR029071 -
Lapu2g00050 235 FunFam Polyubiquitin 3 7 82 - -
Lapu2g00050 235 CDD Ubl_ubiquitin 83 158 - -
Lapu2g00050 235 CDD Ubl_ubiquitin 159 234 - -
Lapu2g00050 235 FunFam Polyubiquitin 3 83 158 - -
Lapu2g00050 235 PRINTS Ubiquitin signature 59 80 IPR019956 -
Lapu2g00050 235 PRINTS Ubiquitin signature 17 37 IPR019956 -
Lapu2g00050 235 PRINTS Ubiquitin signature 38 58 IPR019956 -
Lapu2g00050 235 SUPERFAMILY Ubiquitin-like 82 158 IPR029071 -
Lapu2g00050 235 Gene3D - 159 235 - -
Lapu2g00050 235 Gene3D - 4 82 - -
Lapu2g00050 235 Gene3D - 83 158 - -
Lapu2g00050 235 SUPERFAMILY Ubiquitin-like 158 234 IPR029071 -
Lapu2g00050 235 ProSitePatterns Ubiquitin domain signature. 33 58 IPR019954 -
Lapu2g00050 235 Pfam Ubiquitin family 85 156 IPR000626 GO:0005515
Lapu2g00050 235 Pfam Ubiquitin family 9 80 IPR000626 GO:0005515
Lapu2g00050 235 Pfam Ubiquitin family 161 232 IPR000626 GO:0005515
Lapu2g00050 235 ProSiteProfiles Ubiquitin domain profile. 159 234 IPR000626 GO:0005515
Lapu2g00050 235 ProSiteProfiles Ubiquitin domain profile. 83 158 IPR000626 GO:0005515
Lapu2g00050 235 ProSitePatterns Ubiquitin domain signature. 109 134 IPR019954 -
Lapu2g00050 235 SMART ubq_7 7 78 IPR000626 GO:0005515
Lapu2g00050 235 SMART ubq_7 83 154 IPR000626 GO:0005515
Lapu2g00050 235 SMART ubq_7 159 230 IPR000626 GO:0005515
Lapu2g00050 235 ProSiteProfiles Ubiquitin domain profile. 7 82 IPR000626 GO:0005515
Lapu2g00050 235 ProSitePatterns Ubiquitin domain signature. 185 210 IPR019954 -
Lapu2g00050 235 FunFam Polyubiquitin 3 159 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00050 Lapu-Chr2 450116 452018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00050 7 83 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.74e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00050 K08770 - ini:109187755 444.891