Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00043 ATGGTTACGCTCGTATCCATGGCTTCGCTCAGGCTTGTGCTGCTGTTGCTCATTCTCAGCCTCCTAAACTTCAACACTTGCAAAGCACAGGAGACCTCCGACACCGTCTATCTGTACCATAACTGTTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACCTCGGCACCCTCCTCAGTTCCCTATCTTCCAACGCCTCCACAGAATTCTCCAACAACACCGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGGGGAGACGTGCCCTCTGAGCTGTGTCAACACTGCGTGTTGAACGCAACGCAACGTCTCCGCTCAGAGTGCTCTCTGGCCAAACAGGCCGTGATATGGTACGACGAGTGCACAGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTAGACATTCGACCACGTGTTGGACTCCTCAACACCGCCAACATATCAAACCAAGAATCCTTCATGAGCCTGCTTTTCCGAACCATTAACACAACCGCTGATGAGGCTGCCAACTTTTCCATAGGTGTGAAGAAATACGCGACGAAGCAGGCCAATATTTCTGGGTTTCAGTCCCTATACTGTTTGGCGCAGTGCACACCCGATCTGTCCCCGCAAGATTGCAGAAGGTGTCTCAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAATGTTAGGTACGAACTCTACCCTTTCTACCGTTTCGAGGCAACCACGCCTTCACCATCACCGTCCCTACTTCCTCCTCCAAACTCCGCCAATTCCCAAGGAGGTGGAGGGATCTCAGCAGGGACCATTGTTGCGATTGTGGTTCCAATTACGGTCGCCGTCGTTCTATTCATAGTGGGAATTTGTTTCTTGAGTAGAAGAGCTGGGAAGAAGCAGGGTTCTGTAAAGGAAGGGAAAACTGTAGATGACATGACCACTGTGGAATCCTTGCAATTCAGTTTCGGCACGATTGAAGCCGCCACAGGCAAATTCTCTGCGGACAACAAGTTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGCACTCTTCCGAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGCTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTTCAACATAGAAATTTAGTGAGGCTCCTCGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAATAAAAGTCTCGACTACACTCTCTTTGACCCTGAAAAGCAAAGGGAGTTGGATTGGGGGAGACGTTACAAGATTATTGAAGGGACTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATAGAGATCTTAAAGCTAGTAACATATTGTTAGACAGTGATGTGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACTTATGGTTATATGGCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGTGGAAAGAAGAATAGCTCTTTCTACCAAACAGATGGTGCTGAGGATCTATTGAGTTATGCATGGCTACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTACAATCAGAATGAAGTCATCAGAAGCATCCATATTGCTCTGCTCTGTGTCCAAGAAGATCCCGAAGACAGACCTACAATGGCAACAATAGTTCTTATGCTAGATAGTAATACTGTTACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACAGTGGAACTGATACAAACATGCCAAAAGGACTGCAATTAGATCAGTCTATAACAAAATCATCACCAATGTCTATCAATGAGATGTCCATTAGCGAAATGGATCCTAGATAA 2016 0.4668 MVTLVSMASLRLVLLLLILSLLNFNTCKAQETSDTVYLYHNCSGGNTTANSAYQLNLGTLLSSLSSNASTEFSNNTVGTSSSDRVYGLFMCRGDVPSELCQHCVLNATQRLRSECSLAKQAVIWYDECTVRYSNRSFFSTVDIRPRVGLLNTANISNQESFMSLLFRTINTTADEAANFSIGVKKYATKQANISGFQSLYCLAQCTPDLSPQDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRFEATTPSPSPSLLPPPNSANSQGGGGISAGTIVAIVVPITVAVVLFIVGICFLSRRAGKKQGSVKEGKTVDDMTTVESLQFSFGTIEAATGKFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQRELDWGRRYKIIEGTARGIQYLHEDSRLRIIHRDLKASNILLDSDVNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWLLWKDGTPLELMDPILRESYNQNEVIRSIHIALLCVQEDPEDRPTMATIVLMLDSNTVTLPTPKRPAFFIHSGTDTNMPKGLQLDQSITKSSPMSINEMSISEMDPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00043 671 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 35 136 - -
Lapu2g00043 671 ProSiteProfiles Gnk2-homologous domain profile. 143 251 IPR002902 -
Lapu2g00043 671 FunFam Cysteine-rich receptor-like protein kinase 10 308 421 - -
Lapu2g00043 671 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00043 671 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Lapu2g00043 671 Gene3D - 146 251 IPR038408 -
Lapu2g00043 671 Gene3D - 33 137 IPR038408 -
Lapu2g00043 671 Pfam Protein tyrosine and serine/threonine kinase 348 615 IPR001245 GO:0004672|GO:0006468
Lapu2g00043 671 ProSiteProfiles Protein kinase domain profile. 346 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00043 671 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Lapu2g00043 671 MobiDBLite consensus disorder prediction 649 671 - -
Lapu2g00043 671 MobiDBLite consensus disorder prediction 649 663 - -
Lapu2g00043 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 671 - -
Lapu2g00043 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Lapu2g00043 671 FunFam Cysteine-rich receptor-like protein kinase 25 145 251 - -
Lapu2g00043 671 SUPERFAMILY Protein kinase-like (PK-like) 331 637 IPR011009 -
Lapu2g00043 671 Pfam Salt stress response/antifungal 42 134 IPR002902 -
Lapu2g00043 671 Pfam Salt stress response/antifungal 156 249 IPR002902 -
Lapu2g00043 671 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Lapu2g00043 671 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Lapu2g00043 671 FunFam cysteine-rich receptor-like protein kinase 10 422 624 - -
Lapu2g00043 671 CDD STKc_IRAK 352 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00043 Lapu-Chr2 397157 408778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00043 6 671 Receptor kinase-like Gene Family AT4G05200 55.328 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu2g00043 PK_Tyr_Ser-Thr 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00043 - - vun:114173511 1153.27