Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00040 ATGTCCAAAATCATGATGATGAAGAGAAAGAGTAGTTCAGGTCGCCAAAGGATTCCAATCCAGAAAATCCCAAAAAAGAGCCATTTGCAGGTGACATTCTCGAAGCGTCGTTCGGGACTCTTCAAAAAGGCTAGTGAGCTTTGCACACTCTGTGGAGTACAAATTGCAATCATCGTCTTCTCTCCCGCTGACAAGGCCTTTTCATTCGGCCACCCAGAAGTTGAATCAGTGATCGATTCTTATGTAAGCGCAACCTCATCACAGGACTGTAATATTCCTAATCACCACCTCGTGGAGCCTCATCGTAGTGCTAATATTGGTAATCTCAACATGCAACTTACCCAGATTCTTAACCAGCTGGAGATGGAGAAAAGGCAGGGAGAAGAGCTGGATCGAGTGTGGAAAACCAGACACGCACAGTTCTGGTGGGAGATCCCCGTCAATGAACTTGGATTGCATGAGTTACGCCATTTTATGTTTTCATTGGAGCAACTCAAGAACAGTGTTGCAAAATATGCTACTCAGATAATGTTCATGGACCAAACAACTCTTGCTCCACCAAATACCGGGCCCGGGCCCAATGGATTTGGGCCTTATGAGGCCTCCTGTGTGTGA 615 0.4602 MSKIMMMKRKSSSGRQRIPIQKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVQIAIIVFSPADKAFSFGHPEVESVIDSYVSATSSQDCNIPNHHLVEPHRSANIGNLNMQLTQILNQLEMEKRQGEELDRVWKTRHAQFWWEIPVNELGLHELRHFMFSLEQLKNSVAKYATQIMFMDQTTLAPPNTGPGPNGFGPYEASCV* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00040 204 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 SUPERFAMILY SRF-like 14 90 IPR036879 GO:0003677|GO:0046983
Lapu2g00040 204 Gene3D - 95 183 - -
Lapu2g00040 204 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
Lapu2g00040 204 Coils Coil 106 130 - -
Lapu2g00040 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Lapu2g00040 204 CDD MADS_MEF2_like 14 88 IPR033896 GO:0000977|GO:0045944
Lapu2g00040 204 Gene3D - 25 94 IPR036879 GO:0003677|GO:0046983
Lapu2g00040 204 PANTHER MADS BOX PROTEIN 15 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00040 Lapu-Chr2 383665 386322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00040 10 177 Type I MADS-box Gene Family AT5G60440 50.296 9.19e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu2g00040 SRF-TF 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00040 - - ccaj:109813387 239.58