Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00008 ATGGAGGAAGAGGAAGATGAAATGGCTTGGTGTTCGTCTGATTCTTGTTCTTCTGATTCTGGCGACGATGACATCGAAGAGCGGAAATCGCAGAACGTGGATGCCCTGGTCAGGGGCAACCTCGTCGTGAAGAGACAATCTCTGCTACCGCGACTTCTATCAGTATCGCAAGGGGCGGCTGTTTGTAGAAAACCCTTTAAACCTCCATCCTCCAAATCTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCGTTCCCCGACTTCCAATTCAATGCCCCAGTAACTGAGTCCCATGTTGATGTTGATGTTCCTGTTTCTGAGGAGCTGCAACCTTCTTTGCCCCCGGGGGTCGACCCTCTAGTACTGTGGCACCCTCAAGACTCCCACCATGACCCTTCTGATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCGGGGCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAGCCATTGGTTCGAAAATCCATCATAGTGACTCCTACCAGCCTTGTGAGTAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGCGAAAGAGTTTGTCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTGTCTCAGCGATTGACAGTTTTACAAGTCCCGAAAGAAATTTACAGGTGCTCATTGTTTCATACGAGACATTCCGAATGCATGCTTCAAAGTTTAGCTCTAGTGACGCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGGCGTTACTATGAGGCACCGATTATCTGTGGAAGAGAACCTGCTGCCACTGCTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTTAATGTTAATCGGTTCATATTAAGAAGGAGTAATGCATTGTTATCAAATCACTTGCCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCGAAAAATGTTAAGAGGGCAATTACTGAAGAACTGAAGCAATCTAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCACCCTAAGCTTATCTATGATACCATACGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGTCGGGAGGGCATGGAGCATGGGTTGAACTATCTGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCAAAAGACAAATGACCGCATTGTCCTCGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCATTTAAGGCTTGATGGCTCCACATCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATCAAAGGACGAATTTGTTTTTCTCTTGAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAACAGGAGCAAAGTGATAGCCTTGTGGCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTTCTTTTCATGAGAACGTCAAGTCAGAGATTCATGAAAAGATACAATGCAGTCGGTGTCAAACACATGGAGGTCCTCGAAGCATTGATGCCCAATCAACAGCTGATAATGAATCTGGCGAAAAAACATCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAACATCAGAAAAGCAGGTCGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCATTTTTTCCCAATTTCTGTACCTGATGCTATCCTTCAGGCTTCAGCAGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTCAACGGACGACTGATACCCATCGAGTCTATCACGAGTCCCAAACTACAGCAAGAGGAACCAAATAGGGAATTTCTCAAAGCAAGGCCAACTCCTTTTTCTTTACATAACAGATTACCACTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCCACTCCCAATGTAAATTCTGCGGGGATTACCAAAAACATCTCCAGTGTGCCATTTAAGACCGACTACTCTATTGTTAGAAAAGTATTACCACACAAAAGATCATGTCCTGCTAATACCAATCATCATAATTGA 2700 0.4307 MEEEEDEMAWCSSDSCSSDSGDDDIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKSHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAFPDFQFNAPVTESHVDVDVPVSEELQPSLPPGVDPLVLWHPQDSHHDPSDTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVCLVALCESTREDVVSAIDSFTSPERNLQVLIVSYETFRMHASKFSSSDACDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATAEEKKIGAERSAELSVNVNRFILRRSNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWSGGHGAWVELSGKMHVLARLLAHLRQKTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQSDSLVAQGNFLSTEDLRDLFSFHENVKSEIHEKIQCSRCQTHGGPRSIDAQSTADNESGEKTSDIGGFAEIAGCLQNLKTSEKQVGSPLEEDLGSWGHHFFPISVPDAILQASAGDEVTFVFTNQVNGRLIPIESITSPKLQQEEPNREFLKARPTPFSLHNRLPLQSASGVASMSSSTPNVNSAGITKNISSVPFKTDYSIVRKVLPHKRSCPANTNHHN* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00008 899 Gene3D - 144 411 IPR038718 -
Lapu2g00008 899 Pfam Helicase conserved C-terminal domain 531 639 IPR001650 -
Lapu2g00008 899 FunFam DNA repair and recombination protein RAD54-like 517 687 - -
Lapu2g00008 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 690 IPR001650 -
Lapu2g00008 899 SMART helicmild6 556 640 IPR001650 -
Lapu2g00008 899 MobiDBLite consensus disorder prediction 719 741 - -
Lapu2g00008 899 CDD SF2_C_SNF 523 651 - -
Lapu2g00008 899 CDD DEXHc_RAD54 171 412 - -
Lapu2g00008 899 SMART ultradead3 167 370 IPR014001 -
Lapu2g00008 899 FunFam Predicted protein 434 508 - -
Lapu2g00008 899 FunFam DNA repair and recombination protein RAD54 140 411 - -
Lapu2g00008 899 Gene3D - 434 703 - -
Lapu2g00008 899 MobiDBLite consensus disorder prediction 719 738 - -
Lapu2g00008 899 MobiDBLite consensus disorder prediction 1 31 - -
Lapu2g00008 899 PANTHER SNF2/RAD54 FAMILY MEMBER 52 776 - -
Lapu2g00008 899 Gene3D - 412 720 IPR027417 -
Lapu2g00008 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 801 IPR027417 -
Lapu2g00008 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 362 IPR014001 -
Lapu2g00008 899 Pfam SNF2-related domain 174 480 IPR000330 GO:0005524|GO:0140658
Lapu2g00008 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 412 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00008 Lapu-Chr2 137732 154402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00008 197 660 RAD5 or RAD16-like Gene Family AT3G16600 24.859 1.76e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu2g00008 SNF2_N 1.9e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00008 K10875 - gmx:100781631 1530.77