Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02196 ATGGAGGACCAGGTGGATTCCCCTGTTGGTGTTCTTGAGGAGTATTTTTTCAAGAGTTCAGAATCAGAAAGCAGTTATTTCAAAGAACCTGGTACTGTGGATTCTGATAAGTCAAAGCCCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGAAGCCAGTAGCCACATTGCATCCTCTCAGTGTCCTCAAGCTCTCCAGAAGATGGATCAATGGCATGAGGGAGACTATAATAAATGCAGATTCGTCCTTGCATAGGTCACCCTGGAAGATCTTCACTCACCATGAGATACAAACCGCAACCAATTACTTCGCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAGGTTTACAGAGGGTGTTTACGAAATGGTCAACTGGTGGCGATTAAACGATTGACACGTGGAGCAGAAAATGAAACCATAGGCGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAATCATCCCAATACTGCTAAGTTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAGGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAACTACCGTGGCCTGTTAGGCAGAAAATAGCATTAGGAACAGCCGAGGGTATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCATCAAATATCTTGCTTACCGAGGACTTTGAGCCGCAGATTTGCGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCATCACACCGTTTCAAAAATTGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTGTTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACCGGGCGTAGAGCACTTGATTACTCACAACAAAGCCTTGTTTTGTGGGCAGAACCTTTTCTGAAAAACAATAATCTTAGGGAGCTGATTGATCCTTCACTTGCTGATGATTTTGACTGTCGGCAGATTCAAATTACGCTCTTCACAGCTTCCTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAAACAGGCACTTCATCACTTGGTAATTGACCCATTGGTGCAGGTTGTACAGCTTATGAATGGTAACCTTAGCTGCTCTAGGTTCACGAAGAAATCTCAACTTCCATTCTTCAGAAAAGACTTTCAGGAAGACTTCATTGATTCTGATTAA 1251 0.4277 MEDQVDSPVGVLEEYFFKSSESESSYFKEPGTVDSDKSKPGSRWHAFLQLLRVKSKKPVATLHPLSVLKLSRRWINGMRETIINADSSLHRSPWKIFTHHEIQTATNYFAQENCIGKGGYAEVYRGCLRNGQLVAIKRLTRGAENETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAEGILYLHEGCQRRIIHRDIKASNILLTEDFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPFLKNNNLRELIDPSLADDFDCRQIQITLFTASLCIQQSSIRRPSMKQALHHLVIDPLVQVVQLMNGNLSCSRFTKKSQLPFFRKDFQEDFIDSD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02196 416 Gene3D Transferase(Phosphotransferase) domain 1 186 380 - -
Lapu1g02196 416 PANTHER OS08G0249100 PROTEIN 6 405 IPR046958 -
Lapu1g02196 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Lapu1g02196 416 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 79 183 - -
Lapu1g02196 416 Pfam Protein kinase domain 111 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02196 416 SUPERFAMILY Protein kinase-like (PK-like) 89 376 IPR011009 -
Lapu1g02196 416 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Lapu1g02196 416 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Lapu1g02196 416 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 186 400 - -
Lapu1g02196 416 ProSiteProfiles Protein kinase domain profile. 109 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02196 416 SMART serkin_6 109 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02196 416 MobiDBLite consensus disorder prediction 19 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02196 Lapu-Chr1 36534848 36537939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02196 97 398 Receptor kinase-like Gene Family AT1G53420 40.323 1.42e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu1g02196 Pkinase 9.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02196 - - gmx:100818913 677.552