Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02172 ATGGATCGAGGGCAAGAACGGGGACCTTACAATATGAATTCTAGACCTTATGATAGGAACATGGTTCCGGATGGTTGGTTTGACTGCCCAGCACATGGACAAGAGGTAGGACGCATAATCCCTTCGAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCACGTGAAAAATATACTCCTAAACAGGCGATTCATCAACAAAGAGTCTTAGGTCGGGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTATTATCCTCTATCAGATTGGACAAAAGAAGGAATTCGTCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTAAAAAAATTCTGTGATGAGGTTCAAGATTTTTTCTCCCAAACAACGAATGAAAAGAAATATATACTTGTACATTGCACCCATGGGCATAATCGTACAGGTTATATGATTGTCCACTTTCTTGTGCGTACGGAATCTATATCTGTTACTGAGGCTATAAATAAATTTGCTTTGGCACGTCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTATATGTTTTATCGGGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAACTTCTGATCCTGATTATCGTGGCACAACTGTTCCAGCTGTGGACAGTTATGGACACATTCCAGCACAGGAGAATATTGTCAGAAATGAAGTATTGACAAATGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTGCAATGGAAGAGGACGTTCGCAGTTTCCTGGATCTCATCCTGGAGAATCTGCAACTCTTGAGACAACGATATTATTATGCCACATGGAAAGCTGATGGAACCCGCTACATGATGCTGATTACTTATGATGGATGTTATTTGATTGATAGAAAATTTCTTTTCCAAAGGATCAATATGCGATTTCCTTGCAAATATTCAAATGGGGGTGCACCTGAGAGGAATCACCACTTCACATTACTTGATGGGGAGATGATTATTGACAGGGATCCTCACACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATTGCAATCAATCAGGTTTCTTTGACAGAGCTGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAGCCTCGTAACATGGAACGTGAGGGCCTTTCAAAGAATACAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGCTTTTGGTTACTATCTACTGTATCAAAGCTCCTTCATAAATTCATTCCACAATTATCGCATTCATCAGACGGTCTCGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTTGTAAAAGTGGGAGCTGGTGATCGTCCCTTGCTTTTTCTGTTTGAACGTGGAAGGAAGAAGTTAATGGAAGAGAATGTTATTTTTAAAGATGCATCAGACATTTCTTCCTATTCAGGAAAGATCATTGAATGCTACTGGGATTCCGTGGAGCATCATTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAGGGATAACATCACAGAAGATGTCTTATTGAATGAGATCAATGAGATAATTTGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCATCAGCATATGGTCTCTTCAAGGCGCAAGTTCTTTTTCTTGGCCATCTCCCTCTTCTTGTCTCCAACACCCACGCTACAAATTCCGTTGGTAGCCCCAATCTCGAAAGACCCCTCCACCCAACTCTACGCCATCTCCATCTTTCTCAAAACCCCACTCCAGCACACCACACTCCACCTGGACCTCGGTTCCTCCCTCACCTGGCTCCTCTGCGACTCCACCTACACCTCCTCCTCCTCCCACCAAATCCCCTGCAACACCTCCCTGTGCGACTCCTTCCCCTCCAACGCCTGCTCCAACGACACATGCGCCCTCTTCCCGGAAAACCCCCTCAGAAGAACCACCCTTCTCGACAACGCCCTCATCGACTCTCTCGCCCTTCCCACCTACGACACCTCCTCTCAGAGCCCACTCGTTCTCATTTCTGATTTCATCTTCTCCTGCGCCAAGGCCCATTTGCTACAAGGCCTCGCCACCAATGTGACGGGACTAGCCGCTTTGGGCCGCTCCAATTACTCTCTCCCGGCCCAAATAAGCACCCCAGGCGCAGCCATCTTCGCCTCCACCACCATCTCTTACTTTTTCTCTTCCAAAATTGACCTCACTTACACCCCTCTCGTTCTAAACCCCATCGCCGACACTGTCGTCACCCACAGCTCACAACCGTCCGATGAGTATTTCATTAACGTCACCTCCATCAAGATCAACGGCAAGACTCTTCCAATCAATGCCTCCATCTTAGCCGTTGATCAAGCCGGCTTCGGTGGGACCAAGATCAGCACTGCGGAGCCCTACACCGTTTTGGAAAGTTCCATTTACAAACTCTTCGTCCAGCTTTTTGTCAACGAGGCCTCCGCTTTTAACTTAACGGTGACGGAGGCCGTTGAGCCCTTTGGCGTGTGCTACCCTGCGGGAGACCTGACGGAGACAAAAGTGGGACCAGCCGTTCCGACCGTTGATCTAGTGATGCACAGCGAGGACGTGTTTTGGAGAATCTTCGGGGGGAATTCCATGGTGAGGATTGAAAAGGGAGGAGTGGATGTGTGGTGTCTGGGTTTCGTGGATGGTGGGACCCATAGGAGAACGAGCGTTGTGATTGGAGGGCATCAATTGGAGGATAATGTAGTGCAGTTTGATCTTGACTCAAATAGATTTGGTTTCACCTCATCTCTGTTGCTCCAGGGTGCCAAGTGTGCAAATCTCAATCTCTCCAGTTTCTCCAATCGCATTACTTAG 3000 0.457 MDRGQERGPYNMNSRPYDRNMVPDGWFDCPAHGQEVGRIIPSKVPLGESFNDYIPREKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIRHVKIRCKGRDAVPDDESVKKFCDEVQDFFSQTTNEKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFALARHPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRTSDPDYRGTTVPAVDSYGHIPAQENIVRNEVLTNDDVLGDPIPPNQLRAMEEDVRSFLDLILENLQLLRQRYYYATWKADGTRYMMLITYDGCYLIDRKFLFQRINMRFPCKYSNGGAPERNHHFTLLDGEMIIDRDPHTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKNTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVVKVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSVEHHWVCMRIRIDKATPNDINTYRKVMRSIRDNITEDVLLNEINEIICLPLYADRIQRDIKAHQHMVSSRRKFFFLAISLFLSPTPTLQIPLVAPISKDPSTQLYAISIFLKTPLQHTTLHLDLGSSLTWLLCDSTYTSSSSHQIPCNTSLCDSFPSNACSNDTCALFPENPLRRTTLLDNALIDSLALPTYDTSSQSPLVLISDFIFSCAKAHLLQGLATNVTGLAALGRSNYSLPAQISTPGAAIFASTTISYFFSSKIDLTYTPLVLNPIADTVVTHSSQPSDEYFINVTSIKINGKTLPINASILAVDQAGFGGTKISTAEPYTVLESSIYKLFVQLFVNEASAFNLTVTEAVEPFGVCYPAGDLTETKVGPAVPTVDLVMHSEDVFWRIFGGNSMVRIEKGGVDVWCLGFVDGGTHRRTSVVIGGHQLEDNVVQFDLDSNRFGFTSSLLLQGAKCANLNLSSFSNRIT* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02172 999 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 187 IPR000387 GO:0016311|GO:0016791
Lapu1g02172 999 Pfam Dual specificity phosphatase, catalytic domain 74 194 IPR000340 GO:0008138|GO:0016311
Lapu1g02172 999 Pfam mRNA capping enzyme, C-terminal domain 470 566 IPR013846 -
Lapu1g02172 999 CDD RNA_5'-triphosphatase 25 191 - -
Lapu1g02172 999 FunFam Basic 7S globulin 779 993 - -
Lapu1g02172 999 Pfam Xylanase inhibitor C-terminal 813 976 IPR032799 -
Lapu1g02172 999 SUPERFAMILY Acid proteases 623 980 IPR021109 -
Lapu1g02172 999 Pfam Xylanase inhibitor N-terminal 631 781 IPR032861 -
Lapu1g02172 999 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 22 211 IPR029021 -
Lapu1g02172 999 FunFam mRNA-capping enzyme isoform A 503 575 - -
Lapu1g02172 999 FunFam mRNA capping enzyme, putative 244 463 - -
Lapu1g02172 999 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Lapu1g02172 999 SMART dsp_5 55 195 IPR020422 GO:0006470|GO:0008138
Lapu1g02172 999 Gene3D Acid Proteases 610 783 IPR021109 -
Lapu1g02172 999 CDD Adenylation_mRNA_capping 274 466 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lapu1g02172 999 Gene3D Acid Proteases 784 993 IPR021109 -
Lapu1g02172 999 Pfam mRNA capping enzyme, catalytic domain 274 465 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lapu1g02172 999 Gene3D DNA ligase/mRNA capping enzyme 244 463 - -
Lapu1g02172 999 Gene3D - 464 574 IPR012340 -
Lapu1g02172 999 SUPERFAMILY Nucleic acid-binding proteins 468 583 IPR012340 -
Lapu1g02172 999 PANTHER MRNA-CAPPING ENZYME 17 579 - -
Lapu1g02172 999 Gene3D Protein tyrosine phosphatase superfamily 1 216 IPR029021 -
Lapu1g02172 999 ProSiteProfiles Peptidase family A1 domain profile. 631 976 IPR033121 -
Lapu1g02172 999 FunFam mRNA capping enzyme family protein 18 229 - -
Lapu1g02172 999 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 276 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02172 Lapu-Chr1 36219336 36236104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02172 11 588 Protein tyrosine phosphatase (PTP) family AT3G09100 60.427 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02172 K13917 - vra:106758011 1149.81