Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02165 ATGGCTGCACCGCCAAATAGCAGGCTTCAAAGAATGTTAAGGGATGCAGTGCAATCAGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAACAAGGGATTTTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACTAGGAAGACAGTTCAAGCAATGGAAGTTAGCACAGAGGAAGCTTCTCTGCAAAGAAGTGAGCAACTTCGAGAGTTATATGAATCGTTATCTGCAGGAGAAGCAAATGCGCAAACTCGAAGACCATGTGCTGCTTTGTCTCCTGAGGATCTAACTGAATCAGAATGGTTCTATTTGCTGTGTGTCTCTTTCTCCTTTCATCCTGGTGTCGGGTTGCCCGGAACAGCATATGCGAGGAGGCAGCATTTCTGGCTCACTGGTGCAAACGAAGTAGACAGCAAAACATTTTCCAGAGCTATTCTTGCCAAGAGTGCTCATATTCAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGTTGGGCACAACCGACAAGATGGACGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGAACAGCACCCTCCGACGGCAAAGCCTGCAGTGTCAGAGCACTCCACCTCCAATCCCACTTCTTCTTCATACCCTGTTGTCGTCACTGCCACCACTGCACCACCCAACAATATTCCCATCCAAAACGACATGAACGTGATTGATAAAGGAGAAGAAGCTAAGTTGAATTCTGAAGCAGGATTAGTAGTTCGTAATAACAGTTTCCTACCGAACGAACTGATGGAGCTGGACACGTTGGAGGAGTTTAGGGTCGGGTCACCCGGAGATGGGTCCAACCACTTGGATTCCTTCCCCACAGAGGAGTCCATGGCACTGTGTTCTGCAGGCTTGGAACTTCTTCAACTTCAACTACCGCCACAACCTCCAGAACATCCTCCCTCAGAAAACATAGCACAAGGCGACACAGACACTCACTACTCTCAGACAGTGTCCAGCATCCTTCAAAAGAACTCCGGCTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACTGATTCGTTCCAATCAGCTTTCAACAAATGGAACTCCGGCACCGACGACTACCAAGGCCACTTCCACATGACGGTGGCAGACGTCACTTCGCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTTCCTTACCTGCACGCCAACCGGGTGAAGGGCAAGGGCGCCCCGTCATACGAGACCAGCCATGTGATGGCGGAGCGGCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTCATTTTGCGTTCAATGGTACCTTTTGTAACCAGAATGGACAAGGCATCCGTTCTGGGAGACACCATCGAATACATAAAACAGCTGAAGGAGAAGATTGAGAGCCTGGAGGCACGTGAGCACCGCGCGGGGAAGAGGAGGATGAGGGAGGTGGAGGTTTCAATCATAGAGAGCGATGCACTGTTGGAGGTGGAGTGTGTGCATAGGGAAGGGTTGTTGCTAGATGTGATGACACTGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAATCGTGGGTTAGGGATGATGGAGTGTTTGTGGCGGAGATGAGGGCCAAGGTCAAGGAAAATGGTAACGGGGAAAAGGCTAGTATTGTGGAAGTGAAGAATGCCCTAAACCAGATTATTCCCCGTCAAATACCCCACCATGACCCATTCACACTGGCTTCCAATGATCATTTTTAA 1743 0.4963 MAAPPNSRLQRMLRDAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANAQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHFWLTGANEVDSKTFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKMDEDLNFIQHIKSFFIEQHPPTAKPAVSEHSTSNPTSSSYPVVVTATTAPPNNIPIQNDMNVIDKGEEAKLNSEAGLVVRNNSFLPNELMELDTLEEFRVGSPGDGSNHLDSFPTEESMALCSAGLELLQLQLPPQPPEHPPSENIAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDDYQGHFHMTVADVTSQWLLKYILFSVPYLHANRVKGKGAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASVLGDTIEYIKQLKEKIESLEAREHRAGKRRMREVEVSIIESDALLEVECVHREGLLLDVMTLLRELGVEVMMVQSWVRDDGVFVAEMRAKVKENGNGEKASIVEVKNALNQIIPRQIPHHDPFTLASNDHF* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02165 580 Gene3D - 412 484 IPR036638 GO:0046983
Lapu1g02165 580 PANTHER TRANSCRIPTION FACTOR TT8 3 563 - -
Lapu1g02165 580 Pfam Helix-loop-helix DNA-binding domain 415 462 IPR011598 GO:0046983
Lapu1g02165 580 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Lapu1g02165 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 413 475 IPR036638 GO:0046983
Lapu1g02165 580 SMART finulus 418 467 IPR011598 GO:0046983
Lapu1g02165 580 Coils Coil 451 478 - -
Lapu1g02165 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 412 461 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02165 Lapu-Chr1 36030553 36053964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02165 331 562 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.303 6.12e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g02165 bHLH-MYC_N 5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02165 - - gmx:100780422 898.271