Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02155 ATGGAAAACCCTCACCCTGCGTCAAGATGCTTGAAGCGTAAGCCTGAAGGAGATGCAAGCCAGGACCAAACAGATTCCAAGGCACTGTGCCTCTCGCTAAAGATCCGTAAGAAGGTTCTGCATCAGGTTTCTCTCCTTAATTCCGCTACCTCGGACTCTGCTACCGTTAAGAGAGCTATTTACAATCTCTCTGTACTCGCTGAAAACGAGGATCTTGTGGATACTGTCCTCGACTGCGACGTTGTTCCTGCTCTGGTGAGGCATTTTCAATTTCCAGATGCACAGAATGGTGATAATGGTAAGCCGGATAAAGACTACAGTGACGGAGTTACCGAGCATGAGCAGCTTGAGGTGGCCAAAGGATGTGCGCTCATCATTGAGCTTCTCGCCGTCAAACAAGAGAATCAGGACCTCATTGTAGGTGCTGGAGCATTGCCTGGTCTTGTAGAATCTGTGAAGAGACACAAGATCTGCACTATTTCTCAACCACTCGTTAATCTTCTCAGGAGAGCAGCTGATGCAATAACGAGCTTAGCTCATGAAAATAATGACATCAAGACCCGTGTCAGGAGGGAAGGTGGTATACCTCCTCTGGTTGAATTACTTGAATTCAATGATATTAAAGTACAGAGAGCATCTGCACGGGCCTTGCGAACTCTTGCTTTTAAAAATGATGGCAATAAAAATCAGATAGTTGAATGCAACGCATTACCCACTCTTGTATTAATGCTTGGATCAGAGGATTCTAAAATACATTCGGAAGCGATTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCAAATATCAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTCACTTAGTTCCTGTTGTTCCGAGAGCCGAAGAGAAGCAGCACTTTTACTTGGTCAGTTTGCCACAACAGATTCCGATTGCAAGGTTCATATAGCCCAAAGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCAGATGACGAGCTTCAGGAAATGTCGTCTTTTGCTCTCGGGAGGTTGGCACAGGACACGCATAATCAAGCTGGTATTGCACAAAGTGGAGGTATAGAGCCTCTGCTTAAACTTCTTGACTCAAAGAAGGCGCCTGTCCAACAAAACGTTACTTTTTCTCTTTATGGTCTTGCTGATAATGAGGACAATGTTGTTTGCATTATCAAGGCTGGTGGTTTTCAAAGACTGAAGGCTGCAAATTTCAAAAATCAACAAACTGTAGAGTGTGCAGTGAAGACGTTAAAAAGATTAGAGGAAAAGACTGAAGGGCGAGTGTTGAAACGCCTAATACGTCTTATGTGCTACCCTGAAGAAAAGGTTCAAAGACGTGTAGTTATTGCTCTTGCATATTTATGTTCTCATCGTGATAGTAAAACTATATTCATTGACAACAGAGGATTAAATTTGCTGCTGGACATGCTTAAATCTCAGAACGTAAAGCAGATGGGTGAAGCTTCAGCTGCGCTTCACAAATTGGCTGCCAAAGCCCATTCTTCTGTTGTCTCCCTTTTTGAACTTCCTCCTCCCTCACCAAGTCCCCAGATGTACTTGGGCGAGGAATATGTAAACAATCCTAAACTTTCTGACGTCACATTCCTGGTTGAAGGTAGAAGCTTTTATGCTCATAGAGGTTGTTTAGTTGCTTCAGACATATTTCGTGCTATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAAAGATGTAGTGATTCCAAATATAAAGTGGGATATCTTTGAATTGATGATGAGATTTATATATACTGGAACGGTAGATGTCAATTTGGACGTGGCCCAGGATCTCCTTAGAGCGGCAGATCAGTATCTTCTGGACGGCCTTAAGCGTATTTGTGAATATGCTATTGTTCAGGAAATTTCAGTGGAAAATGTTGCACTACTGTACAAGATGGCTGAAGATTTCAATGCTACTTCATTAAGACATGCATGCATACTGTTTATGTTGGATAAATTTGATGTACTGAGATCTGAACCATGGTATTCTTCCCTGGTATATCACATTCTTCCGAACATATGCACGTTCTTCTCAACTTTACTTGTCAAATCTCATCCAGCTGACTTGTGA 2109 0.4263 MENPHPASRCLKRKPEGDASQDQTDSKALCLSLKIRKKVLHQVSLLNSATSDSATVKRAIYNLSVLAENEDLVDTVLDCDVVPALVRHFQFPDAQNGDNGKPDKDYSDGVTEHEQLEVAKGCALIIELLAVKQENQDLIVGAGALPGLVESVKRHKICTISQPLVNLLRRAADAITSLAHENNDIKTRVRREGGIPPLVELLEFNDIKVQRASARALRTLAFKNDGNKNQIVECNALPTLVLMLGSEDSKIHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICSLSSCCSESRREAALLLGQFATTDSDCKVHIAQRGAIPPLVDMLKSSDDELQEMSSFALGRLAQDTHNQAGIAQSGGIEPLLKLLDSKKAPVQQNVTFSLYGLADNEDNVVCIIKAGGFQRLKAANFKNQQTVECAVKTLKRLEEKTEGRVLKRLIRLMCYPEEKVQRRVVIALAYLCSHRDSKTIFIDNRGLNLLLDMLKSQNVKQMGEASAALHKLAAKAHSSVVSLFELPPPSPSPQMYLGEEYVNNPKLSDVTFLVEGRSFYAHRGCLVASDIFRAMFDGSYREREAKDVVIPNIKWDIFELMMRFIYTGTVDVNLDVAQDLLRAADQYLLDGLKRICEYAIVQEISVENVALLYKMAEDFNATSLRHACILFMLDKFDVLRSEPWYSSLVYHILPNICTFFSTLLVKSHPADL* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02155 702 ProSiteProfiles BTB domain profile. 538 604 IPR000210 GO:0005515
Lapu1g02155 702 Gene3D - 277 516 IPR011989 -
Lapu1g02155 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Lapu1g02155 702 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Lapu1g02155 702 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Lapu1g02155 702 Pfam Armadillo/beta-catenin-like repeat 183 221 IPR000225 GO:0005515
Lapu1g02155 702 SMART BTB_4 538 634 IPR000210 GO:0005515
Lapu1g02155 702 Gene3D Potassium Channel Kv1.1; Chain A 517 663 IPR011333 -
Lapu1g02155 702 SUPERFAMILY ARM repeat 166 510 IPR016024 -
Lapu1g02155 702 MobiDBLite consensus disorder prediction 1 21 - -
Lapu1g02155 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Lapu1g02155 702 Gene3D - 35 159 IPR011989 -
Lapu1g02155 702 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Lapu1g02155 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Lapu1g02155 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Lapu1g02155 702 SUPERFAMILY POZ domain 529 632 IPR011333 -
Lapu1g02155 702 MobiDBLite consensus disorder prediction 1 23 - -
Lapu1g02155 702 SMART arm_5 132 180 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 266 306 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 422 463 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 182 222 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 349 389 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 224 264 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 464 504 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 308 348 IPR000225 GO:0005515
Lapu1g02155 702 SMART arm_5 69 131 IPR000225 GO:0005515
Lapu1g02155 702 SUPERFAMILY ARM repeat 45 154 IPR016024 -
Lapu1g02155 702 Gene3D - 160 274 IPR011989 -
Lapu1g02155 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 697 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02155 Lapu-Chr1 35871146 35877167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02155 279 521 U-box Gene Family AT1G23030 21.344 9.28e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu1g02155 BTB 9.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02155 - - gmx:100783124 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02155 1 35871146 35877167 Lapu1g02155 1 35871146 35877167 ECH