Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02143 ATGAAACAGGAATACGCCGAGGAAACCTTCACTTTAACCAATGAGAGGAAGAGGGCGAGAGATGCTGAAGAAATACAAAGTGTGGGTTCTAATGCTGGATTGATCCCAGAATCCTCAAGGAATCTTGAGGTGCATTTCGAGGATTACTCGATGGTGCAAATTCCCAAAAGCTTCAGTAGGACCGTGATTCAGCAAAAGCAATTGGGTAGCGGTGAAATCCAATTTGGTGAAAATTTCAACGCTTCAAATGATAATGTTTTGGTGGGGCTGGAATTGATTGCCATACTACAACGCCGCACCAGAGGTTTTAGACGCTTAAGTAAGATTCATGGTGTGGATTTGAGGAATGAAACTGAGGGTACATGCCCCAGAAGATTACTTAAGAGGGAAATACTAGAAGGGTGTGGACAAATATCTCAGGACGAGGTGAATCAACTTGAGAAGGTTGCTGCAAATGCGAACAATGTTGTGTTTGAGGAGGAAAAGGTGAAAAGAATGGATTTCTTAAACGAAAAACGTTTTGTTCAAAAAACTAACAGGACGCGTAGAAAGCTGAACACAGGAAAACGAACTTTTTTTTCGTGGATGATTTCTGTGAAAACGATAAAATCACGGGAGAGGGTTTACTACAGGGATCACAGGAGTAAAAGTGTATCACTGGGTGGAGATGCCGTTGCAGATGGCATTCTGTGTGACTGTTGTTCTAAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCCTGGAAACAAGAATTCTTTGGTGAAGTGGGGAGAATATCCAATCCCCTACAAAACATATGTTTGGGGAGAGGAAGAGGACTTTGTCTCTTGCAATGGTTGGCAGAAACCTGGGATAAGCAAACTGAGTTTTCTTCTAGGTTTTATCACTTGGTTCGTGTGGCGCAAGACCAAAACGACGATATTTGTAGCATTTGTGGGGAAAAGGGAGAGCTCATCTGTTGCGATGGTTGCCCGTCAACTTTCCACCAGAGCTGCTTGGGTTTACAAGCAGTTCCAGCAGGTGATTGGCACTGTATGAGTTGCTGCTGCAAATATTGTGGGTTTAAATGTGGAAAGATAGAGATCAACTTTGCAGGCTTTATCCCGTTTGAGATGTCGTCCGAATGCCTTATATGCGAGAGAAGATATCACCAATGCTGCCTTCGGGCCAATGGAGGCAATGGTGGTCCTTCTAAACATCTACCCTTGTGTGGAAAAGGCATTGACACACTTACATCTATCCTCACACCATACATTTCCATATACCAAGCTCTAATTCCAGTCACACTTCCACAACACTTAGCATTTCTTGTACCTCTTCTTCTTCCAGAGTCATCCACCACCTTATCAACCAGCAACGGATCAGAAGAAGTAGAACTTGATTGTTCTTCCTTCCTTATGTTCATGTTTCCTAACAATCATGATATATCCCTATACTTGCAACCAAGTGCTCAATTCATGTTATATGAGAGACTTCAAAAGCTTCTTGGCGTTAAACATCGAATTGAAGATGGATTGTGTTGGTCTTTAATTTGCCGTACAGATGTTGACCCTAATTTATCAAGGTTAGAACCCGCTAAGGTTGAATCCAATGCCAAACTGGGTGTTGCATTATCGATATTGAGTGAGAGCTTCATGCCATACATCGAAGAGGGAACTGGGGCAAATATACTACAAAGTGTTATATATAGTTCTGGGTCAAACTTACCTCGCCTGGATTGTAAGGGGTTTTTCACTGCGATTCTAGAGAGAGATTATGAGATTATCAGCGTTGCATCAATCAGGATTCATGGGAACAGCCTAGCAGAGATGCCATTTGTTGCAACTGTTTCTGCTTATAGGAAGCAAGGAATGTTCGGACGGCTTCTGCAACTAATTGAACAGGCACTCAGCCACCTAAACGTTGAGTTATTGGTTGTACCAGCTGTGGAACAAGTAAAAAAAACTTGGATTCGTACTTTTAGGTTTGAGCCAATTGATTCGAGAACCGAGAACATATTAAAGAGCGTGAACCTGCTGGTATGTCGTGGCACAGAAATATTACAGAAGAAGATACCAAGGCCTACATGA 2070 0.4227 MKQEYAEETFTLTNERKRARDAEEIQSVGSNAGLIPESSRNLEVHFEDYSMVQIPKSFSRTVIQQKQLGSGEIQFGENFNASNDNVLVGLELIAILQRRTRGFRRLSKIHGVDLRNETEGTCPRRLLKREILEGCGQISQDEVNQLEKVAANANNVVFEEEKVKRMDFLNEKRFVQKTNRTRRKLNTGKRTFFSWMISVKTIKSRERVYYRDHRSKSVSLGGDAVADGILCDCCSKVVSISEFEFHSWKQEFFGEVGRISNPLQNICLGRGRGLCLLQWLAETWDKQTEFSSRFYHLVRVAQDQNDDICSICGEKGELICCDGCPSTFHQSCLGLQAVPAGDWHCMSCCCKYCGFKCGKIEINFAGFIPFEMSSECLICERRYHQCCLRANGGNGGPSKHLPLCGKGIDTLTSILTPYISIYQALIPVTLPQHLAFLVPLLLPESSTTLSTSNGSEEVELDCSSFLMFMFPNNHDISLYLQPSAQFMLYERLQKLLGVKHRIEDGLCWSLICRTDVDPNLSRLEPAKVESNAKLGVALSILSESFMPYIEEGTGANILQSVIYSSGSNLPRLDCKGFFTAILERDYEIISVASIRIHGNSLAEMPFVATVSAYRKQGMFGRLLQLIEQALSHLNVELLVVPAVEQVKKTWIRTFRFEPIDSRTENILKSVNLLVCRGTEILQKKIPRPT* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02143 689 ProSiteProfiles Zinc finger PHD-type profile. 306 351 IPR019787 -
Lapu1g02143 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 401 IPR013083 -
Lapu1g02143 689 ProSitePatterns Zinc finger PHD-type signature. 309 348 IPR019786 -
Lapu1g02143 689 SUPERFAMILY FYVE/PHD zinc finger 293 350 IPR011011 -
Lapu1g02143 689 PANTHER PHD FINGER PROTEIN 12 155 686 IPR042163 GO:0003714|GO:0045892
Lapu1g02143 689 Pfam Tify domain binding domain 226 282 IPR032308 -
Lapu1g02143 689 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 581 659 IPR016181 -
Lapu1g02143 689 SMART PHD_3 308 349 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02143 Lapu-Chr1 35582756 35590561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02143 488 685 PHD Transcription Factor Family AT1G05380 45.729 3.21e-50 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02143 - - pvu:PHAVU_001G152900g 464.536