Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02130 ATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTCCTTGTGAGGCACAGGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGTCTTGCTCGCCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCAATAAAAAAGGCTAATGGTGTTAACTTTTCTGAAGAGAAACTTTGCAAATGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCACGTAAATCATATCCTTCACCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCTAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTCTGGGATGCTGCATTTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTGACATACAATCATTGATTAATAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGACTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCATAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCCGAGGCAAATTACGTAAGGAGAACTCGTTTCGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGCCATTTAGCAAGGAAAGGTCATTGAATCCTAATATTTCTGAAACTGAACAAGTTTCTCAGTGTTTTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGTTGTGTACGTAACAAATACAATGTTGATACATCAAAAGCCACAAAGTTCTCAACAGTTGAGAGAACGCCAAGATTGAGGGCAGTTACAGCTTCTGCCACTGCCAAAAGGCAAACAATGGCACCACCAAAGACAACCTATACTGGTCCAAACCGAGATTCACTTCCAGTATCTAATGCACCACCTGGAAGGTTTTCCTCACCACCAAGAGCCAGGGTGACAGCGAACTTGTACACCAATTTTTGTGTCCTTGGAAGTTTGGACTCTCCTAATGTATCTGTTAATGCACCGCGAATCGACAAGATGGCTGAATTCCCAATGGCTTTCTGTGAGGATCCGTTTTTCCCTATCCGTGGACCATCATCAACATCAGCTCGCTGCTCTTCAAGCTCAACGAGGACTACTGCTGATTGCTCCATCACAATGGACAAGTGTACAATCCAGGAGGACAAAGTTACTGTCCCCAACAGTATCAGTGATTCTTGCCCTGGTCCAAAGGGAAATGAATGCCATTCTGAGCATGTAAAAGCTTGTGTTTCTAGTCCCTCCTCTGCGGAGGTGGATCAGCGCCGGTTTGACACTTCATCATACCAGCAACGCGCAGAGGCATTGGAGGGTTTGCTAGAGTTCAGTGCCAGACTCCTACAACAACAAAGGTTTGATGAGCTTGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGAGAAACAGCGATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1812 0.4299 MEQYEILEQIGKGAFGSALLVRHRHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDLDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIHKIHLKLNSPRRSTFPFQWPEANYVRRTRFVEPESVSTLSDQDKCLPFSKERSLNPNISETEQVSQCFTQRAHGLSTCSEEKIYELSVGCVRNKYNVDTSKATKFSTVERTPRLRAVTASATAKRQTMAPPKTTYTGPNRDSLPVSNAPPGRFSSPPRARVTANLYTNFCVLGSLDSPNVSVNAPRIDKMAEFPMAFCEDPFFPIRGPSSTSARCSSSSTRTTADCSITMDKCTIQEDKVTVPNSISDSCPGPKGNECHSEHVKACVSSPSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02130 603 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02130 603 MobiDBLite consensus disorder prediction 379 418 - -
Lapu1g02130 603 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lapu1g02130 603 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 559 - -
Lapu1g02130 603 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Lapu1g02130 603 MobiDBLite consensus disorder prediction 382 405 - -
Lapu1g02130 603 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
Lapu1g02130 603 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lapu1g02130 603 CDD STKc_Nek 3 258 - -
Lapu1g02130 603 FunFam Serine/threonine-protein kinase Nek3 86 331 - -
Lapu1g02130 603 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02130 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu1g02130 603 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02130 603 Gene3D Transferase(Phosphotransferase) domain 1 86 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02130 Lapu-Chr1 35400394 35408195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02130 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 9.87e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu1g02130 Pkinase 2.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02130 K08857 - gmx:100792678 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02130 1 35400394 35408195 Lapu1g02130 1 35400394 35408195 ECH
Lapu1g02130 1 35400394 35408195 Lapu7g00254 7 2938564 2944950 PCT