Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02125 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACCTGGGAGGACTCAGTCACGGCCTCTCTAACATTTCTCCTCAACAACAACAACAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAATAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGGGGCCATAACCTCCCCTGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCATCCAGGGCCCTGGGTGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCCGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTATCAGCAAATCCATTAGCCGTTGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCATATGACCAGTTTCAACCAATGGGACTCGTCTCAAGAAAACCCTAACCCTAGCAACACTGCCACTTCCCTCCACATCAAGCCAGAATCTCAAACTTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAACAAGAGCAGCAACACCCCAACAAGGGCATGATAACCTCACCCTTCGGGAACCTCCACGTGCCCTCACAAGCCTCCAACGTTGACACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAGAAGGCTGCAACCGTTGGAGCCGCTGCCATGACGGGCCCAGGCACTGCTTCTGTTGGACATCAGCGCGCAATGGGCCACGTGACTCAGCTCGGCGCGAACGAGTTCGGAACAGTGAGCCAACTCGACCCGGTGGTGGTGCCAGAAAGCTACATGAGAGGGTTCCCCGGTCGGAGCCTCAAGAGTGACCGTCTCACTAGGGACTTCCTCGGACTCACGGCAGAATCTAACGGCGGAGTTGACGGCGCCACGGTTGACGTTAGGACGAACGTGAAGGATATGCTGACATTCGCAGGGAGTGTAGAGTACCACCAACCCTTCCGTCAGCATCATCACCACGCGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACATGGGGGAATTGTTGA 1395 0.5068 MFPTAISNSTSLSEDASVSSGTKVQDLGGLSHGLSNISPQQQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANPLAVAATTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNTATSLHIKPESQTFHNPTLSSLLQQQEQQHPNKGMITSPFGNLHVPSQASNVDTSAYMSATALLQKAATVGAAAMTGPGTASVGHQRAMGHVTQLGANEFGTVSQLDPVVVPESYMRGFPGRSLKSDRLTRDFLGLTAESNGGVDGATVDVRTNVKDMLTFAGSVEYHQPFRQHHHHALLKPQQGFGFLETTTAPETWGNC* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02125 464 Gene3D Classic Zinc Finger 57 126 - -
Lapu1g02125 464 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Lapu1g02125 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 415 IPR031140 -
Lapu1g02125 464 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lapu1g02125 464 Gene3D Classic Zinc Finger 147 211 - -
Lapu1g02125 464 MobiDBLite consensus disorder prediction 1 61 - -
Lapu1g02125 464 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Lapu1g02125 464 MobiDBLite consensus disorder prediction 1 50 - -
Lapu1g02125 464 FunFam protein indeterminate-domain 12-like 57 125 - -
Lapu1g02125 464 SMART c2h2final6 119 149 IPR013087 -
Lapu1g02125 464 SMART c2h2final6 154 174 IPR013087 -
Lapu1g02125 464 SMART c2h2final6 78 100 IPR013087 -
Lapu1g02125 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02125 Lapu-Chr1 35305668 35310483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02125 15 451 IDZ Gene Family AT4G02670 50.664 8.30e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g02125 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02125 K25870 - gmx:100788975 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02125 1 35305668 35310483 Lapu7g00377 7 4544821 4548888 PCT
Lapu7g00262 7 3053513 3057422 Lapu1g02125 1 35305668 35310483 PCT