LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g02115	ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCAACTGGAGGCAAGAAGAAGGCATGGAGAAAGAAGAGAAAGTATGAGCTTGGGCGCCAATCTGCAAACACTAAGTTATCGAGCAACAAGACAATCCGGAGGATTCGCGTTAGAGGTGGCAATGTAAAATGGAGGGCACTGAGGTTGGACACTGGAAATTACTCATGGGGTAGTGAAGCAGTTACCCGCAAGACTCGTATTCTAGACGTTGTTTACAATGCGTCAAACAATGAGCTTGTGAGAACTCAGACTTTGGTCAAGAGTGCTATTGTCCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGAAATTGGCAGAAAAAAGAAAGCAGCATCCAAGAAGGACTCTACTGAGGAGGGTGAAGCTGCTGCTGAAGAAACCAAGAAAAGTAACCATGTGCAGAGAAAACTTGAGAAGCGCCAGAAAGATCGCAAACTTGATTCTCACATTGAAGAACAATTTGGTGGTGGCAGATTGTTGGCATGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCTGATGGGTACATTCTGGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAGCTCCAGAAGAAGAAGGGAAAGGGTGCTGCTGCTTAA	657	0.4627	MGISRDSMHKRRATGGKKKAWRKKRKYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKAASKKDSTEEGEAAAEETKKSNHVQRKLEKRQKDRKLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA*	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu1g02115	218	Gene3D	Ribosomal protein S8e, subdomain	108	175	IPR042563	-
	Lapu1g02115	218	Gene3D	-	26	212	-	-
	Lapu1g02115	218	FunFam	40S ribosomal protein S8	109	175	-	-
	Lapu1g02115	218	CDD	Ribosomal_S8e_like	5	196	-	-
	Lapu1g02115	218	FunFam	40S ribosomal protein S8	161	214	-	-
	Lapu1g02115	218	MobiDBLite	consensus disorder prediction	11	26	-	-
	Lapu1g02115	218	MobiDBLite	consensus disorder prediction	125	166	-	-
	Lapu1g02115	218	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lapu1g02115	218	FunFam	40S ribosomal protein S8	32	160	-	-
	Lapu1g02115	218	Pfam	Ribosomal protein S8e	5	196	IPR022309	-
	Lapu1g02115	218	NCBIfam	ribosomal protein eS8	1	198	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Lapu1g02115	218	ProSitePatterns	Ribosomal protein S8e signature.	11	30	IPR018283	GO:0003735\|GO:0005840\|GO:0006412
	Lapu1g02115	218	PANTHER	40S RIBOSOMAL PROTEIN S8	1	214	IPR001047	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g02115	Lapu-Chr1	35172292	35175712	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu1g02115	1	205	Cytoplasmic Ribosomal Protein Gene Family	AT5G59240	84.951	2.70e-126	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g02115	K02995		-	gmx:100500112	394.045