Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02065 ATGGAAGGTCGCCGGAGGGTAACACTACATGAACAAATGTCAGCTTCCGATAGCAGCCGAGCCCGAGTGCTAACCGGCTTGACCCTTAACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCAGCGCCGCCACAGCCCAAGAACCGAACCCTACTTGACATCATCAAAGAAGACGAGACCAACAAAAAGGATCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTAGGTTAAAGCGCGCAGGCTCTGCTTGGACATCGACAATTCATATCCCTACTTCGGATGTTCCTATTCCTAACCCGAATAGCAGAATCTTTACCCAGCTTGGTCGCCGTAACTCGGTCCGATTCCCAACTCAGACTCTAACTCCGACTCAGTCCCAGACTCAGACTCCCACTCACTCCGACTCCGACATGTCATCTCACTACATGACTCACCAGGTAGAGGACCTCGAACCCGCCGCCGAAGATTCCAGTTCTCCGGCAACCGGAGCTTCACCAATCCGCCCCCAGTTCAGCCGCCGCGGCTCCACGCGCTTCGCCGGAGACGCCTCCGAGAACAACACCGCGGGCACCCTGCGGCCACAGCTCTCGCGGCGGAACTCCTCGAATGTGCAGTCGGAGCCGTTCCGGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATACGGAAGAGGCCGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCGAGGGAGGCAGTGGCGGCGCAGGAGGCGTCGGAAGCGGCGGCGCAAGAGGCGGAGGCGGAGGAGGACCAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAAGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGAAGAGGATTTTGATGAGGATGTAGATGAAGATGGTGAAGATGATGATGAAGGTTCCATGGAGCACACTTGCTGTGTTTGCATGGTCAGGCATAAAGCTGCTTCTTTTATACCCTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTACAGTTAGCAGGGGCAATTGCCCTATCTGCAAAAATTTCATCTTGGAGGTTCTTGAGATTTTTTAA 1098 0.5556 MEGRRRVTLHEQMSASDSSRARVLTGLTLNDVLANQKRPSSAPPQPKNRTLLDIIKEDETNKKDRRSWKAFKDKLRLKRAGSAWTSTIHIPTSDVPIPNPNSRIFTQLGRRNSVRFPTQTLTPTQSQTQTPTHSDSDMSSHYMTHQVEDLEPAAEDSSSPATGASPIRPQFSRRGSTRFAGDASENNTAGTLRPQLSRRNSSNVQSEPFRRGRVVTFRDSFDDEDTEEAGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEDQAPVMMSLMDLLEETDREMGLEGSRYILSDEEDFDEDVDEDGEDDDEGSMEHTCCVCMVRHKAASFIPCGHTFCRMCSRELTVSRGNCPICKNFILEVLEIF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02065 365 MobiDBLite consensus disorder prediction 158 209 - -
Lapu1g02065 365 MobiDBLite consensus disorder prediction 110 240 - -
Lapu1g02065 365 SUPERFAMILY RING/U-box 316 361 - -
Lapu1g02065 365 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Lapu1g02065 365 Pfam Zinc finger, C3HC4 type (RING finger) 314 359 - -
Lapu1g02065 365 SMART ring_2 317 354 IPR001841 -
Lapu1g02065 365 Coils Coil 241 264 - -
Lapu1g02065 365 MobiDBLite consensus disorder prediction 110 141 - -
Lapu1g02065 365 PANTHER OS01G0917900 PROTEIN 20 365 - -
Lapu1g02065 365 CDD RING-HC 316 354 - -
Lapu1g02065 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 365 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02065 Lapu-Chr1 34623653 34625924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02065 19 365 C3H Transcription Factor Family AT3G07120 33.504 2.31e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02065 - - var:108328735 545.043