Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02054 ATGGATTTTTTGGAACTGAAGATGGTCAAAGTTCCAGATTTTGCACATGGGTCACCCGTCAGACTTCAACCAGACATGTGTAGAAGCCGATGTTTGGAGAGTTGTTCTTGCATTGCATACTCATATGATGCTGATATTGGTTGTATGTCTTGGACTGAGAATCTAATTGACATACAACAATTCTCAAACGGAGGACTTGATCTACATATTCGAGTAGCTTACACAGAGCTTGTAGAGATCATCAAAAGATTGCTTCAATTTAAGGGAGGTGGAGCACCTGTAGAATATACAAATGACTGTGTATTTTGTGATCTGTCACAAGTCAAACTCCAGGAACTATTAACATTTAGTTTTGAAAAGCTTGTGACTGCCACAAACGAATTTCACCAATCCAACAAACTAGGAGAGGGTGGTTTTGGTCCAGTATACAAGGGGCAATTGCACAATGGTAGGGCAATTGCAGTTAAAAGACTTTCTAGGGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTTGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTAGGCTGCTGTATTGAAGATCCCTCAAAAGATAAAATTCTTTATTGGAGAAAACGCTTTAGCATAATAGAAGGAGTGGCCCGAGCAATGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATCCATAGGGACTTGAAGGCAAGTAATATCTTGCTAGATATGGAGCTAAATCCAAAAATATCTGATTTTGGTATGGCTAGAATATTTGGTGGGAATGAGGATGAGGCAAATACTAGAAGAGTTGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCAATGCAAGGATTGTTCTCTGAAAAATCAGATGTCTTTAGTTTTGGGGTTTTGCTACTTGAGATTATTAGTGGAAGACGAAATTCAAGCTTTTATGATGAAGAAAACTCTCTTACCCTTTCAGGATTTGCATGGATACAATGGAAAGAAGACAACATTCCATCTCTAATAGATCCAGGAATATATGATCCTAACCTTCGTAAATATATTCATAGTGAGATTTTGGATCTTCCTCCTCCAATGAAACCTGCATTCATCCTGAGGAAAATTATGTTAAGTTCACTTTCCTCTGTAAGAGAAAATGACTTGAACTCCCTCAACACTGTCACTGTTTCGGACATCCAAGATCGTTGA 1194 0.3836 MDFLELKMVKVPDFAHGSPVRLQPDMCRSRCLESCSCIAYSYDADIGCMSWTENLIDIQQFSNGGLDLHIRVAYTELVEIIKRLLQFKGGGAPVEYTNDCVFCDLSQVKLQELLTFSFEKLVTATNEFHQSNKLGEGGFGPVYKGQLHNGRAIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEDPSKDKILYWRKRFSIIEGVARAMLYLHRDSRLKIIHRDLKASNILLDMELNPKISDFGMARIFGGNEDEANTRRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIISGRRNSSFYDEENSLTLSGFAWIQWKEDNIPSLIDPGIYDPNLRKYIHSEILDLPPPMKPAFILRKIMLSSLSSVRENDLNSLNTVTVSDIQDR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02054 397 CDD PAN_AP_plant 1 73 - -
Lapu1g02054 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Lapu1g02054 397 ProSiteProfiles Protein kinase domain profile. 128 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02054 397 Pfam Protein kinase domain 208 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02054 397 SMART ntp_6 1 72 IPR003609 -
Lapu1g02054 397 ProSiteProfiles PAN/Apple domain profile. 1 73 IPR003609 -
Lapu1g02054 397 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 352 - -
Lapu1g02054 397 Pfam PAN-like domain 3 58 IPR003609 -
Lapu1g02054 397 Pfam Protein tyrosine and serine/threonine kinase 129 194 IPR001245 GO:0004672|GO:0006468
Lapu1g02054 397 Gene3D Phosphorylase Kinase; domain 1 103 197 - -
Lapu1g02054 397 SMART serkin_6 128 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02054 397 FunFam Os08g0179000 protein 102 204 - -
Lapu1g02054 397 Gene3D Transferase(Phosphotransferase) domain 1 198 375 - -
Lapu1g02054 397 FunFam Lectin-domain containing receptor kinase A4.3 188 352 - -
Lapu1g02054 397 SUPERFAMILY Protein kinase-like (PK-like) 111 348 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02054 Lapu-Chr1 34480719 34499050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02054 112 341 Receptor kinase-like Gene Family AT4G05200 55.777 1.10e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lapu1g02054 Pkinase 3.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02054 - - gmx:113002415 515.768