Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02052 ATGTGTTTCAGCAACCATGCAAACCTGTTCTTTGTTCTGTTCTTACTGTGTTTTTATATGTTGGACGTTTGTATTGCCATAGACAGCATCACATCATCACAATCCATCAAGGACCCTGAAACTCTAAGGTCAGAAGATGGCAACTTCACTTTGGGGTTCTTCACCCCTCCAAACTCTACAAACCGCTACGTTGGAATTTGGTGGAAGTCTCAGTCTACAGTTATATGGGTTGCTAACAGAAACCAACCGCTGAATGATTCTTCTGGAATTGTTACAATATCTGAAGATGGCAATCTTGTGGTGCTGAATGGAGTGAAACAAGTCATTTGGTCAACAAATGTATCCAAAACATTATCCAATACAAGTTCAGAGTTTTCAGACTTTGGTAAGCTTGTACTCGTGGAAAGCACAACAGGAAACATCTTATGGGATAGTTTTCAGCAACCTTCAGATACACTCTTGCCCGGTATGAAACTTTCAAGCAGCATAAAAACTAGTAAGAAAGTAGAACTTACATCATGGAAAACTCCTTCTAATCCCTCTATTGGGAGCTTCTCTTCTGGGGTTGTTCAACGTCTTGATATTCTTGAAGTGTTCATTTGGAATCAAACTCGACCTTACTGGCGCAGTGGTCCATGGAATGGTGGGGTATTTACAGGGATACCGACCATGTCAACATATCTTAATGGTTTCAAAGGTGGGGATGACGGCGAAGGAAATATAGATATCTATTACACAGTGCCAAGTGAATTAGGATTTGTAATCTATATGTTGAATTCGAAAGGCCAATATGAACAAAAATGGTGGGATGCTGAGAAGAATGAAATGGAACTTATATGGACTAGTCAAATGTCAGATTGTGATGTTTATGGAATGTGTGGACCATTCACAAGCTGTAATGCACAGAGCAAACCAATATGTAGTTGTTTGAAAGGATTTGAGCCGAGGAACAAGGAGGAATGGAATGGAAAAAACTGGACTGGTGGATGTGTTAGGAGAACACCTTTGAAGTGTGAAAGGGTCAGAGATCAAAACACAAGTACGGATGCAAAGGAAGATGGGTTTTTGAAACTGCAGATGGTTAAAGTTCCTGATTTTCCAGAAGGGTCTCCTGTTGAGAATGACATATGCAGAAGCCAATGCTTGGAGAATTGCTCCTGTGTTGCTTTTTCTCATGATGATGGGACTGGTTGCATGTCTTGGACGGGGAATCTACTAGACATACAACAATTTTCAGAGGGAGGACTTGATCTATATGTTCGTGTAGCCCACTCTGAACTTGAAAAAGGGACAAACACAAAAATCATCATTACAACAGCAGTAATAGTAGCAACTGTGGTTTTGGTTACTAGTGCATATGTCATGTGGAGGACTTCCAATCATCCAGCTAAAGTATGGCACTTAATTAACTCAGTAAGGAAAGGGAACAACAATGCTTTTGTACAATTTAATAATGGTGGAACACCAGAACATCAAAGCCATAGTGTAATTGAAGAACTGTCACAAGTTAAACTACAGGAGCTGTTACTATTTGATTTTAAAAGGGCTGCAACAGCCACAAACAACTTTCATCCTTCCAACAAACTTGGGCAAGGTGGTTTTGGTCCTGTGTACAAGGGAAAACTGGAAGATGGACAGGAAATAGCAGTTAAAAGACTCTCTAGAGCCTCCGGACAAGGTCTAGAAGAATTCATGAATGAAATAGTCGTGATTTCCAAGCTTCAACATCGGAATCTTGTAAAACTTTTTGGCTGCTGCGTTGAAGGTGATGAGAAGATGTTGATATATGAATACATGCCAAATAAAAGTTTGGATGCATTTATCTTTGATCCATCAAAATGTAAACTCCTAGACTGGAGGAAGCGTTGTAGCATAATAGAAGGAATAGCTCGAGGAATACTTTATCTTCACAGAGACTCCAGACTAAGAATTATACACAGAGATTTGAAGGCGAGTAATATATTGTTAGATGAAGAGCTAAATCCAAAGATATCAGACTTTGGTATGGCTAGAATCTTTGGCGGGAGTGAAGATCACGCCAATACTAGTAGAGTTGTTGGAACCTATGGCTACATGTCTCCTGAATATGCAATGGAAGGATTATTTTCAGAGAAATCAGATGTGTTCAGCTTTGGTGTTTTGGTACTAGAGATTGTTAGTGGAAGAAGAAATTCAAGCTTTTATGACGATGTGCATGCCCTTAGCCTTTTAGGATTTGCCTGGATACAATGGAAGGAAGGAAATGCATTATCTTTAATAGATCCAGAAATATATGATCCTAGTCATCATAAAGATATCTTAAGGTCTGTCAAATCTTATAGTGGCCATTTGGTTCATAGTAATGTGTTTCAGAAGCAGTGCAAACATGTTCTTTGTTTTGTTCATGCTGTGTTGTTATGTTTTGAACATTGGAACTGCCACAGACACCATCACCTCATCTCAGTTCATCAAGGACAACGAAACTATAACCTCCACGGGTGGCAACTTCACCTTGGGGTTCTTCACTCCTGA 2511 0.3963 MCFSNHANLFFVLFLLCFYMLDVCIAIDSITSSQSIKDPETLRSEDGNFTLGFFTPPNSTNRYVGIWWKSQSTVIWVANRNQPLNDSSGIVTISEDGNLVVLNGVKQVIWSTNVSKTLSNTSSEFSDFGKLVLVESTTGNILWDSFQQPSDTLLPGMKLSSSIKTSKKVELTSWKTPSNPSIGSFSSGVVQRLDILEVFIWNQTRPYWRSGPWNGGVFTGIPTMSTYLNGFKGGDDGEGNIDIYYTVPSELGFVIYMLNSKGQYEQKWWDAEKNEMELIWTSQMSDCDVYGMCGPFTSCNAQSKPICSCLKGFEPRNKEEWNGKNWTGGCVRRTPLKCERVRDQNTSTDAKEDGFLKLQMVKVPDFPEGSPVENDICRSQCLENCSCVAFSHDDGTGCMSWTGNLLDIQQFSEGGLDLYVRVAHSELEKGTNTKIIITTAVIVATVVLVTSAYVMWRTSNHPAKVWHLINSVRKGNNNAFVQFNNGGTPEHQSHSVIEELSQVKLQELLLFDFKRAATATNNFHPSNKLGQGGFGPVYKGKLEDGQEIAVKRLSRASGQGLEEFMNEIVVISKLQHRNLVKLFGCCVEGDEKMLIYEYMPNKSLDAFIFDPSKCKLLDWRKRCSIIEGIARGILYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDHANTSRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLVLEIVSGRRNSSFYDDVHALSLLGFAWIQWKEGNALSLIDPEIYDPSHHKDILRSVKSYSGHLVHSNVFQKQCKHVLCFVHAVLLCFEHWNCHRHHHLISVHQGQRNYNLHGWQLHLGVLHS* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02052 836 Pfam Protein tyrosine and serine/threonine kinase 526 723 IPR001245 GO:0004672|GO:0006468
Lapu1g02052 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Lapu1g02052 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Lapu1g02052 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 774 - -
Lapu1g02052 836 SMART ntp_6 350 422 IPR003609 -
Lapu1g02052 836 CDD STKc_IRAK 529 768 - -
Lapu1g02052 836 SMART serkin_6 523 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02052 836 SUPERFAMILY Protein kinase-like (PK-like) 507 765 IPR011009 -
Lapu1g02052 836 Pfam D-mannose binding lectin 73 175 IPR001480 -
Lapu1g02052 836 CDD B_lectin 33 149 IPR001480 -
Lapu1g02052 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Lapu1g02052 836 Gene3D Phosphorylase Kinase; domain 1 486 598 - -
Lapu1g02052 836 ProSiteProfiles Protein kinase domain profile. 523 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02052 836 Gene3D - 23 147 IPR036426 -
Lapu1g02052 836 PIRSF SRK 1 772 IPR024171 GO:0004674
Lapu1g02052 836 SMART blect_4 33 149 IPR001480 -
Lapu1g02052 836 CDD PAN_AP_plant 334 423 - -
Lapu1g02052 836 Pfam PAN-like domain 351 408 IPR003609 -
Lapu1g02052 836 Gene3D Transferase(Phosphotransferase) domain 1 599 800 - -
Lapu1g02052 836 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Lapu1g02052 836 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Lapu1g02052 836 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Lapu1g02052 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 800 - -
Lapu1g02052 836 FunFam receptor-like serine/threonine-protein kinase SD1-8 495 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02052 Lapu-Chr1 34480719 34499050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02052 507 770 Receptor kinase-like Gene Family AT4G23230 60.227 9.49e-108 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu1g02052 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02052 - - gmx:100779455 1335.86