Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02038 ATGGAGAACAACGCATTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCCTTCGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGCCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATATTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGATTTATACTGTTGCTTACAAGAGAAGGGAAGACGAAACTCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTATTATGAATTTGACATCCAACTCACGTAATGTGGGACCTTCTGAATGTATGGAGCAATCAGGGTCCACCACCCATGAGAGGGACGAAGGAACAGTCTATTCTAATGGAGAGCCTGATATTACTGGAACTCCTGCTAAAAGAAAGACATTGCCTCTGGAAGAGATTTCTCTCCAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTGCTCTTTCGTCCTGTAGTTCTTAATTGTGGTCATGTATACTGTCAAACTTGTGTCACCAACACCGATGACGACACGCTCAGATGCCAAGTTTGTCAAAGTCCACATCCCAGAAGGTTTCCAAAAGTATGTTTAGAGTTGGATCACTTTTTGGAGGAACAGTTTCCTGAAGAATATAGACAACGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACGCCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGGAAATATAGATTGGTGGTCAGATCCAGACTCAAAAGTTCACATTGGTGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCGACTCGCTCCAAGCTTCCCGGCCGATTCAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAACAATCCTACATGATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTGACCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACAGCCCTACTTTGTTTGATGATGGAGAAGATAACCACAGTGATTCTGAAGCCACCAATTGA 1263 0.4196 MENNAFRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYTVAYKRREDETLEEEKKSGFYSPQFDPDTCESQAKFGHSGIPSSSSIMNLTSNSRNVGPSECMEQSGSTTHERDEGTVYSNGEPDITGTPAKRKTLPLEEISLQQKLSVADVTCTMCKQLLFRPVVLNCGHVYCQTCVTNTDDDTLRCQVCQSPHPRRFPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETPSCSLDKGNKGGNIDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLEQSYMIHNIMLRLATAQLGDTSIDLESVGNLEIASDSPTLFDDGEDNHSDSEATN* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02038 420 MobiDBLite consensus disorder prediction 141 179 - -
Lapu1g02038 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 125 IPR013083 -
Lapu1g02038 420 SUPERFAMILY RING/U-box 193 257 - -
Lapu1g02038 420 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Lapu1g02038 420 SMART zz_5 306 355 IPR000433 GO:0008270
Lapu1g02038 420 PANTHER UNCHARACTERIZED 16 383 - -
Lapu1g02038 420 Pfam RING-type zinc-finger 200 234 IPR027370 -
Lapu1g02038 420 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Lapu1g02038 420 FunFam E3 ubiquitin-protein ligase PRT1 1 111 - -
Lapu1g02038 420 FunFam E3 ubiquitin-protein ligase PRT1 187 282 - -
Lapu1g02038 420 SUPERFAMILY RING/U-box 301 364 - -
Lapu1g02038 420 Gene3D - 300 367 IPR043145 -
Lapu1g02038 420 SMART ring_2 200 237 IPR001841 -
Lapu1g02038 420 SMART ring_2 25 64 IPR001841 -
Lapu1g02038 420 Pfam Zinc finger, ZZ type 308 347 IPR000433 GO:0008270
Lapu1g02038 420 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Lapu1g02038 420 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Lapu1g02038 420 MobiDBLite consensus disorder prediction 401 420 - -
Lapu1g02038 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 285 IPR013083 -
Lapu1g02038 420 FunFam E3 ubiquitin-protein ligase PRT1 301 366 - -
Lapu1g02038 420 SUPERFAMILY RING/U-box 17 73 - -
Lapu1g02038 420 MobiDBLite consensus disorder prediction 406 420 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02038 23 102 C3H Transcription Factor Family AT2G42030 32.500 1.65e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02038 - - gmx:100782681 762.296