Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02037 ATGAAGTCTACTATGGCTCAGAATCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTACATGCTACTGCAAAAGCTTTTGTCGCAGAAGGAAAAGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACGCAGCAAACAAAAGCTAGAGAACAACAACTTCAAATACAGCAAATGCAACTAATGCAGCAACGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTAGTTCCCTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATGGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCTGGGAATATGTCAACTGCATTGCAGCAAATTCCTGGGCGAACTCCTTTGATCACTGACATCAAAGCAGAAGTTAATTTAGGTGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGCCTAGGCAGTGCAGGATTAAATCAAGGAGTTACTGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGCACAAGTTCCAAAGCCCAATTTGACAACCCATAACCAATTTGTTATGTCATCGCAACAGCAACAGGTCTTGACACAGAATAACCTTGGAAATTCTAGCTATAGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCAAACAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGATGAAGATGGCTCAGTCACAACATTCATTATCTCAACAGCAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAATAGAAAAAGAAAACAGCATTCTGGAGCTGGCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAGTAACATCCTGCATGTTAACCAAAAGAGCATGATGATATATGGTACAGAGGCAACAGGAGGCCTTGCATCATCATCGAATTTACTGGAGGACATGGATCGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTTTCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCGGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAATTTGGTAGCATAAGATCAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCGTCTGGAGCATGGACACCTTGCAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTTTAGACCAAATTCACTTCAGTTGGCAACTGCCTCAATTGATAAATCGGTGCGGTTATGGGACACAACGAATCCTACCCGTTGTGTGCAAGAATACAGTGGGCACTCTTCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGTGATGGAGAAAATGAAATTCGATATTGGAATATTAATTCGCCCAACTGCTCCCGTGTAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCAGTTACTAGCAGCAGCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAGCTGACACGAAAATCTACTCCCTGCAGGGTCATCCTGAACCAGTGAGCTATATTTGCTGGGATGGGAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCGGGAGAATGCATTCAGGAGATCAGCTCCACTGGAAGCGCATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATATGCGTGCTTAGAGCTATGGAACATGAGCGAGAACAAAAGCATGACAATTTCTGCACATGAAAATGTAATATCTTGCATGGCTCAGTCTTCTGTCACTGGAATGGTCGCCTCTGCAAGTTTTGACAACTATGTAAAGCTGTGGAAATAA 2337 0.4228 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSLNAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLMDANRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLITDIKAEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGAQVPKPNLTTHNQFVMSSQQQQVLTQNNLGNSSYSDMDPRRLSGLPRGSLSAKDGQSNRNDGSICSQMQSDSPKMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAGNSTGTGNTAVPSPNSPPSTHTPGDGLNTASNILHVNQKSMMIYGTEATGGLASSSNLLEDMDRFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEFGSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVVWSMDTLQTENSPAEHKAVITDVRFRPNSLQLATASIDKSVRLWDTTNPTRCVQEYSGHSSAIMSLDFHPKKTELFCFCDGENEIRYWNINSPNCSRVTKGGNTQVRFQPRLGQLLAAASDKGVSIFDVEADTKIYSLQGHPEPVSYICWDGNGEALASVSLNMVKIWSLNSGECIQEISSTGSAFHSCVFHPSYSTLLVIGGYACLELWNMSENKSMTISAHENVISCMAQSSVTGMVASASFDNYVKLWK* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02037 778 Coils Coil 85 105 - -
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 571 IPR001680 GO:0005515
Lapu1g02037 778 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 778 IPR001680 GO:0005515
Lapu1g02037 778 Gene3D - 626 778 IPR015943 GO:0005515
Lapu1g02037 778 Pfam WD domain, G-beta repeat 541 571 IPR001680 GO:0005515
Lapu1g02037 778 Pfam WD domain, G-beta repeat 743 778 IPR001680 GO:0005515
Lapu1g02037 778 Pfam WD domain, G-beta repeat 577 615 IPR001680 GO:0005515
Lapu1g02037 778 Pfam WD domain, G-beta repeat 502 529 IPR001680 GO:0005515
Lapu1g02037 778 Coils Coil 349 376 - -
Lapu1g02037 778 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 778 IPR044716 GO:0003714
Lapu1g02037 778 MobiDBLite consensus disorder prediction 322 411 - -
Lapu1g02037 778 SMART Lish 14 46 IPR006594 GO:0005515
Lapu1g02037 778 CDD WD40 495 778 - -
Lapu1g02037 778 SMART WD40_4 739 778 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 618 654 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 532 571 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 575 615 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 698 737 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 490 529 IPR001680 GO:0005515
Lapu1g02037 778 SMART WD40_4 657 695 IPR001680 GO:0005515
Lapu1g02037 778 MobiDBLite consensus disorder prediction 301 411 - -
Lapu1g02037 778 SUPERFAMILY WD40 repeat-like 494 778 IPR036322 GO:0005515
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 778 - -
Lapu1g02037 778 Pfam LisH 16 41 IPR006594 GO:0005515
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 624 IPR001680 GO:0005515
Lapu1g02037 778 Gene3D - 419 625 IPR015943 GO:0005515
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 571 - -
Lapu1g02037 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02037 Lapu-Chr1 34213200 34222023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02037 579 777 Miscellaneous Gene Families AT5G08390 23.529 4.30e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lapu1g02037 WD40 0.035 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02037 - - gmx:100799686 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02037 1 34213200 34222023 Lapu1g02037 1 34213200 34222023 ECH