Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02030 ATGGTTTGGGCTTTCTTGATTAGGACGCGCCAAAAGTCTAGTGCAGATCAACAAGGGTACCATCTAGCTGCAGTGGGAATTAGAAGATATAGTTATTCTGAGTTGAAGAAGGCCACAAAGGGGTTCAGTAAACAGATTGGAAGGGGTGCAGGAGGGGTAGTGTACAAAGGTATTTTATCAGATCAAAGCCATGCAGCAATAAAGAGACTGAATGAAGCTAAACAAGGAGAAGGGGAGTTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCAGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAAGGGTTCTTTGGCAGAAAATCTCTCATCCAACACACTGGATTGGAGTAAGAGATATAACATTGCTCTTGGTATGGCAAGAGTTTTAGCATATCTGCATGAAGAGTGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCCCAGAACATACTTCTTGATGCAAATTATCAACCCAAGGTAGCAGATTTTGGTCTGTCCAAGCTACTAAACAGAAATAATATGAACAACAGTTCAAGGTTTTCAATGATAAGAGGAACTAGAGGATATATGGCACCTGAGTGGGTTTACAATTTACCAATCACCTCCAAAGTGGATGTTTACAGCTATGGAATTGTTCTCTTGGAGATGGTAACTGGAAAAAGTCCAACAATCGGTGTCCAAAGCATTGATGGAGAAGAATCATATAATGGAAGGCTGGTAACATGGGTGAAAGAAAAAAGCAGTGGCACATCTTGGGTAAAACAAATCATTGATCCTGCAATTCAAACAAACTACAATGAATGTAAGATGGAGCTTTTGGTTAGAGTGGCTTTGGCTTGTGTTGAGGAAAGTAAAGATATGAGACCTACCATGAGTCAAGTTGTTGAAATGCTTCAAAGCCATGAAAGTAAGTCATAA 966 0.4027 MVWAFLIRTRQKSSADQQGYHLAAVGIRRYSYSELKKATKGFSKQIGRGAGGVVYKGILSDQSHAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEKGSLAENLSSNTLDWSKRYNIALGMARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNMNNSSRFSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLEMVTGKSPTIGVQSIDGEESYNGRLVTWVKEKSSGTSWVKQIIDPAIQTNYNECKMELLVRVALACVEESKDMRPTMSQVVEMLQSHESKS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02030 321 CDD STKc_IRAK 46 315 - -
Lapu1g02030 321 Pfam Protein kinase domain 43 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02030 321 FunFam Serine/threonine-protein kinase 115 321 - -
Lapu1g02030 321 SUPERFAMILY Protein kinase-like (PK-like) 17 314 IPR011009 -
Lapu1g02030 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Lapu1g02030 321 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02030 321 Gene3D Phosphorylase Kinase; domain 1 5 114 - -
Lapu1g02030 321 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Lapu1g02030 321 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Lapu1g02030 321 PANTHER OS07G0415500 PROTEIN 2 317 - -
Lapu1g02030 321 SMART serkin_6 40 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02030 321 FunFam S-receptor-like serine/threonine-protein kinase 9 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02030 Lapu-Chr1 34131735 34134113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02030 30 318 Trihelix Transcription Factor Family AT5G38560 41.667 7.92e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lapu1g02030 Pkinase 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02030 - - gmx:100785351 541.191