Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02028 ATGAGTTGCTTTTCATGTTTTTCATCCAATAAAGTAGCCAAAAATCAAAACAATGGACGGAAGATACAACAGCCTGCTACTCATTCTCCCAAAGAATCAGCCCAATCAACCCAGTCACATCCAGATATCAATGCAAAGACAAACCCCCAAACAGAACCTAAAAAGGAGGTCAATAGAGATAGGAACAACAACATTGCTGCTCAAACTTTCACCTTCAGGGAATTGGCTAATATCACAAAGAACTTCAGGCAGGAATGCTTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAGACTTGAAAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAATAGAGAGTTTCTTGTTGAAGTTTTAATGTTGAGTCTTTTGCACCATAAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGATTATTGGTCTATGAGTACATGCCATTGGGAGCCCTTGAGGACCATCTTCTTGATCTTGGTCGAGGAGAAAAGCCTCTAGAATGGTTCAATAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCGAATCCTCCAGTGATATACCGTGACTTGAAATCATCTAACATCTTATTGGACAGAGAATTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGTTGGGTCCTACAGGGGACAAATCTCATGTATCTTCAAGAGTAATGGGTACTTATGGATACTGTGCTCCTGAGTACCAAAGAACTGGTCAACTAACAGTAAAATCAGATGTATACAGCTTCGGAGTTGTTTTGCTTGAATTGATCACTGGAAGAAGAGCCATTGATAACACAAGACCAACACGGGAGCAAAATCTCGTTAATTGGGCATATCCAGTATTCAAGGACCCAAACAGATACTCAGAATTAGCAGACCCACTTCTTGAAGGAAACTTCCCAATGAGATCCTTGCATCAAGCAGTGGCAGTAGCAGCCATGTGTTTGAATGAGGAGCCATCAGTGAGACCCTTGATCAGTGATGTTGTGACTGCTATTAGTTTCCTTGGAACACTCCAAAAGAGTGAAGACCTCTCAGGAATGTCACCTGTTCACATGCCCTCCCCATCACAGCAAGACCAAGAAGCCATGGATGCACCTCTTAATCTTCTTGATCATGATATCAGCGCTATCGAACGCCAAAGGGCAGTTGCTGAAGCCATCGAATGGGGCACAAATTCTAGGAACAAAGCACCACAGCGTGAAACTTCTCCCTCTTTGTAA 1293 0.4184 MSCFSCFSSNKVAKNQNNGRKIQQPATHSPKESAQSTQSHPDINAKTNPQTEPKKEVNRDRNNNIAAQTFTFRELANITKNFRQECLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGALEDHLLDLGRGEKPLEWFNRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDREFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRPTREQNLVNWAYPVFKDPNRYSELADPLLEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTAISFLGTLQKSEDLSGMSPVHMPSPSQQDQEAMDAPLNLLDHDISAIERQRAVAEAIEWGTNSRNKAPQRETSPSL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02028 430 MobiDBLite consensus disorder prediction 14 63 - -
Lapu1g02028 430 SMART serkin_6 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02028 430 MobiDBLite consensus disorder prediction 411 430 - -
Lapu1g02028 430 Gene3D Transferase(Phosphotransferase) domain 1 159 370 - -
Lapu1g02028 430 FunFam Serine/threonine-protein kinase PBS1 159 372 - -
Lapu1g02028 430 MobiDBLite consensus disorder prediction 14 51 - -
Lapu1g02028 430 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02028 430 CDD STKc_IRAK 88 353 - -
Lapu1g02028 430 Pfam Protein kinase domain 84 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02028 430 FunFam Serine/threonine-protein kinase PBS1 53 158 - -
Lapu1g02028 430 MobiDBLite consensus disorder prediction 416 430 - -
Lapu1g02028 430 PANTHER OS07G0668900 PROTEIN 3 366 - -
Lapu1g02028 430 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Lapu1g02028 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lapu1g02028 430 Gene3D Phosphorylase Kinase; domain 1 52 158 - -
Lapu1g02028 430 SUPERFAMILY Protein kinase-like (PK-like) 67 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02028 Lapu-Chr1 34113527 34115852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02028 1 418 Glycoside Hydrolase AT3G07070 66.508 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu1g02028 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02028 - - gmx:100786405 714.916