Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02015 ATGGCACTAAATAAGACAGGAAACTTGTTAGGTACCAACACTGGTAAGGATCCTAGCGTGTTTCCTCAGCATGCCCGACAAGATCTATCTGGTGGTGTTTCAAATACAGGGCGTCATGTGCAAAATAAAATCACTATGCAGTCGGGGGAAGAATTTTCTGTGAATGTTGGTCATGATGGAATTGCTGCTGGAAGGGTTCTTGTTTCACCAGATATAACTCGAAATCATGAGAATGTGTTTGGGTTGAATAGAGATAATGGCAATGTGAGATATGAAGATCTTACTAATATTTTGGGGCTGCGAAGAATGAACTCTGAGGCTTCTTCTGACATATCTGACTTTGTATCTATGAAACAGTCAGTACACGAGATGGAAGATGGAGCTTCTGTAAACATTTTTAACAATGTTCAAAAGGGTGATGGTATGTTGAGGAAGGCTGCTCAAGAACCAGTGCGTGACCAGTCTGGTCTCGCAGTTGTATCACCCCTTCTCAGATATGAAGCTTCTCAGTCCAATGGATTTTCCAGTTCCGGAGTTGTAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAGATATGTAGGGGGAGACACCCACATCATATCTATCCCAAAGGATATTTCATGGCAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCTGTTTCCTCTTATGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAGCGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTAGGTGAGTCTGAAGAGACATCATCAACTGAGGTGAGTGCTGTTCAGCAGAGTGATCCTGATTACCAATATGTTGTTGCCGTAAATGGCATGGGAGACTCTACTAGAACAAACATTGGTGGGCAAAATTTGACAAATGAATCCAGTCAGTTGGGGACAGATTTGAATTTTTCTCCAGTTCTCCCAAAAACTCCAAATGCTTCTGCTTTGGAGATTAGGGATGGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCTCTGAATTTGCAAAGGCCTTTGTCAATTCCTCCCACTCCAATTCCGGTAACATGTTCTAGCACAGGATATATACAATTACTTGGTGACCACTCATGTCAGGGAAGTATTGAGAGCAATGCTTCATATGCAACTGGTCAGCTACATTCTGAGTACTCTAATATAAGCACTGCTGGACGCATATACCCTCAGCATGTGGCTGCTACTTTGTCAAGTGACACTTGTCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGAGGTCATTCAGACTACAATCCCAGCAACGACTTAGTGACTCCTGTATATGTTAATCCCAGAGATAATTTTTTCGGTGAAAGGTCCTTGCAAAGGGAAAGAAGGATCTACTCTGAAATCCCTCTTTCATACGTGGATGATCCAATCTGTCAACATGGTGAATCTTATGGAATTACAGGCTCCCCTCATGGGATGCCCCATGCCTTTTCTGATCCACAGTTGCTAGAGAGTGGAGCAAGGTCTGGTTACTGCTCCCAAAATGGACATGGTCAGTCTTTCTCCCTGAACCCTGAAAAGGGTCAATTATCTTCATTGTTCCCTAGTGTCTCGCAAGTGAACATTATGGAGCACCAGCATGATTCCATTGTCCATCATCCTCAAATACAAAGTAAGACACCAAAAGTTGAGACAGCTGAGGCACACAAAAGGCAAGATTTGGCATCTTCTCCATACTATGAATCCATAAGAATGAATGATCTTGCTCACATGGATAACATATTAACTGAAAAAAAGAACTTAATTGCTCAAACTGACTTGAGTAAACCCAGTTACGAAGCAAAGGATGTTCAGGAAAATTCTGTGAAATTAGAAAGGATGAAGATAATTGAACAAAAGAATTCTATTCCCAAGGATAGCAACGTTCACCGAGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTGCATCTTTTCGACTCCTACCCTGCCAATAACTTAAATGTTAATATTAATATGCAAAAGAATTGGGAGCTACCTTCTGAGGGTATTGTTCCTGCTCTATCAGGCACGAGGATCCTTTCCTCAAATAATCTTGGGGAAAAGACTCCGTTTGATTCTGATGTGAGCCAAAGGACTAGTGAGCACAACAAATCTGCTCTGGCTGAAGGTCTGAATGGTGAACAAGGGTTTGATTTTTCATTGACCCGAAATTTTGATTTAAATGCTTCAATTTTAAATTCTGAAGTAGACTCTTGTGATAAAAGTTCTCAAGGAGATCATATGTTCAAGCTGTCCATTCACCCAAATTCTCTTAAAGCTGCACAAATTCATCCTTTGAAGAATCAGATGGCCATAGGTTTTCAAGAAAATCCTACAGTAAGCTCTGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTCTAAACATGCCTATGAATGGCCTCGATAATTCAAGCAATATTATGTCATTTAAAAACACACCACCTTTGATTGATAACTTCATTACCAACACTGGTCTAATGGTGGATCAGTTTATCCCCAAACACTCTGCCGCTGGAATGTCAAATGTTGAAGAAAAAATTTCAGAACAACCTAATGTTTTAGAAGGCTGTACTGATGTCAATCGAGTGGAGTCATTCACAGTAGCAGACTTGACTTGTGTTGTTCATCCATATATTTCAGGTGATGTTGGAAGTGCTGTTGTCTCCCCATCTTATACAGAAGCTGGGAGCATGATCCCCGAGTCTGAACCTGAGGATTTTAGTGAAGAAAAAAATGAATTCCTTTCTGATGCAATGATGGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATAATAAAGAATGTTGATCTTGAAGAGCTTACAGAGTTAGGTTCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATTAAAAAGAGTTGCTTTGCAGGAAGGTCTTCTGAGCAAGAACAATTGGCAAAAGATTTTTGGAGAGAGGCACAAATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGACTGGAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATTACTTGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTCAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCTTGGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGAAATAGTAGTCGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTTAGACCTCCTGTGCCTGAACGATGCGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCCGAAAGCCGACCATCGTTCACAGAGATAACCAGCAGGTTAAGATCTATGTCTCTGGTCCTTCAACCAAAAGGGAATTATCAGGCATATCATTTAGGACCCTCCTGA 3837 0.4071 MALNKTGNLLGTNTGKDPSVFPQHARQDLSGGVSNTGRHVQNKITMQSGEEFSVNVGHDGIAAGRVLVSPDITRNHENVFGLNRDNGNVRYEDLTNILGLRRMNSEASSDISDFVSMKQSVHEMEDGASVNIFNNVQKGDGMLRKAAQEPVRDQSGLAVVSPLLRYEASQSNGFSSSGVVDDFLSGKMKFLCSFGGKILPRPSDGKLRYVGGDTHIISIPKDISWQELMKKTLGICNQPHTIKYQLPGEDLDALISVSSYEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVSAVQQSDPDYQYVVAVNGMGDSTRTNIGGQNLTNESSQLGTDLNFSPVLPKTPNASALEIRDGINALNPDGILNDSLNLQRPLSIPPTPIPVTCSSTGYIQLLGDHSCQGSIESNASYATGQLHSEYSNISTAGRIYPQHVAATLSSDTCPYQHGDVGQPKKLNGGHSDYNPSNDLVTPVYVNPRDNFFGERSLQRERRIYSEIPLSYVDDPICQHGESYGITGSPHGMPHAFSDPQLLESGARSGYCSQNGHGQSFSLNPEKGQLSSLFPSVSQVNIMEHQHDSIVHHPQIQSKTPKVETAEAHKRQDLASSPYYESIRMNDLAHMDNILTEKKNLIAQTDLSKPSYEAKDVQENSVKLERMKIIEQKNSIPKDSNVHRGKSTAIDKGFVTELHLFDSYPANNLNVNINMQKNWELPSEGIVPALSGTRILSSNNLGEKTPFDSDVSQRTSEHNKSALAEGLNGEQGFDFSLTRNFDLNASILNSEVDSCDKSSQGDHMFKLSIHPNSLKAAQIHPLKNQMAIGFQENPTVSSGSLYPAAFCDDLGPSLNMPMNGLDNSSNIMSFKNTPPLIDNFITNTGLMVDQFIPKHSAAGMSNVEEKISEQPNVLEGCTDVNRVESFTVADLTCVVHPYISGDVGSAVVSPSYTEAGSMIPESEPEDFSEEKNEFLSDAMMAEMEASIYGLQIIKNVDLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFAGRSSEQEQLAKDFWREAQILSNLHHPNVVAFYGIVPDGTGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLVLQPKGNYQAYHLGPS* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02015 1278 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 987 1081 - -
Lapu1g02015 1278 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1082 1273 - -
Lapu1g02015 1278 MobiDBLite consensus disorder prediction 1 20 - -
Lapu1g02015 1278 Pfam PB1 domain 204 288 IPR000270 GO:0005515
Lapu1g02015 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1119 1131 IPR008271 GO:0004672|GO:0006468
Lapu1g02015 1278 MobiDBLite consensus disorder prediction 1 36 - -
Lapu1g02015 1278 PANTHER SERINE-THREONINE PROTEIN KINASE 232 1259 - -
Lapu1g02015 1278 ProSitePatterns Protein kinases ATP-binding region signature. 1000 1025 IPR017441 GO:0005524
Lapu1g02015 1278 PRINTS Tyrosine kinase catalytic domain signature 1076 1089 IPR001245 GO:0004672|GO:0006468
Lapu1g02015 1278 PRINTS Tyrosine kinase catalytic domain signature 1184 1206 IPR001245 GO:0004672|GO:0006468
Lapu1g02015 1278 PRINTS Tyrosine kinase catalytic domain signature 1113 1131 IPR001245 GO:0004672|GO:0006468
Lapu1g02015 1278 PRINTS Tyrosine kinase catalytic domain signature 1228 1250 IPR001245 GO:0004672|GO:0006468
Lapu1g02015 1278 Pfam Protein tyrosine and serine/threonine kinase 997 1257 IPR001245 GO:0004672|GO:0006468
Lapu1g02015 1278 Gene3D Phosphorylase Kinase; domain 1 987 1081 - -
Lapu1g02015 1278 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 207 289 - -
Lapu1g02015 1278 CDD STKc_MAP3K-like 1000 1257 - -
Lapu1g02015 1278 SMART PB1_new 202 289 IPR000270 GO:0005515
Lapu1g02015 1278 SUPERFAMILY CAD & PB1 domains 203 293 - -
Lapu1g02015 1278 Gene3D Transferase(Phosphotransferase) domain 1 1082 1271 - -
Lapu1g02015 1278 Gene3D - 206 288 - -
Lapu1g02015 1278 ProSiteProfiles Protein kinase domain profile. 994 1263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02015 1278 SUPERFAMILY Protein kinase-like (PK-like) 988 1256 IPR011009 -
Lapu1g02015 1278 CDD PB1_UP2 191 286 - -
Lapu1g02015 1278 SMART serkin_6 994 1263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02015 Lapu-Chr1 33922069 33942858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02015 184 474 MAP Kinase Kinase Kinase AT1G16270 39.935 5.22e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lapu1g02015 PK_Tyr_Ser-Thr 8.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02015 - - pvu:PHAVU_008G122700g 2170.97