Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02014 ATGTTAGTTGCTTTCTGGGTTTCAGTTCTAGAGATGGAAGAGGTGATGGAGGTAGCCAATAATGGAGAGAGCCAAAGACAAGATGCATCCAGAGTTTTTCCATGTCTATTCTGTTCAAGAAAGTTCTACAGTTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAAAAGGAAAGAACAGCTGCAAGGAAGGCCAAGAGGGCTTCTGAGTACTCACGTGTTTCCTTCCCTTCCCCACTGTCAGCCCCTATGATTTTTGCTCCAACCCATCTAGACATTTTAAGTCCTTCAATGTTCATCACTGCCCATGCAGCAGAACTCCCTTGTCTCCAAAGCCATCAAATTTCGGAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAATGCACTGTTCTATGCGGGAAGTAACCGGTTACATGAGGATGGGAAGAGACCTAGTGTTCGCTGGGGGGACACATCTCAACACAAGTCATTGATAAGTAACGAACAAAATCATGAAATTTGGAATAATGGTACAGAAAAGGATCAAAAGCTTGATTTATCTCTCCATTTGTAG 558 0.4319 MLVAFWVSVLEMEEVMEVANNGESQRQDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRASEYSRVSFPSPLSAPMIFAPTHLDILSPSMFITAHAAELPCLQSHQISEQFGSNGAPRFGNALFYAGSNRLHEDGKRPSVRWGDTSQHKSLISNEQNHEIWNNGTEKDQKLDLSLHL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02014 185 PANTHER ZINC FINGER PROTEIN JAGGED 25 185 IPR045320 GO:0003700
Lapu1g02014 185 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Lapu1g02014 185 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Lapu1g02014 185 Gene3D Classic Zinc Finger 11 78 - -
Lapu1g02014 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02014 Lapu-Chr1 33908222 33909340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02014 10 185 C2H2 Transcription Factor Family AT5G48890 38.220 1.91e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02014 - - gmx:100792059 281.567