Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02013 ATGGTGGTCATAGAGCAGGAAGAGAGCGAGCACCGAAATGCGAGCCCCTCCAACGCAGCCGGCGCTGCCAACGACGCTTCCGACGGCTTCGAAACAGCCAGTGAGGCCGATCTCGGCAGTGATGATGACGGCGGAGATGGCGGAGCAGACAGACAAGAGGAGCAGAATCACCCCGAGAAACATCACCGGCAACAGCAGACTGAGCAACAACCTGAACACGATATTCCTCAGAGCACCACCGAATCCTCCGAGAATTCCTTGATCACCGAAGAGTCCTCCGATAATGCCTTGTTAACCGAAGAGTCCTCCGAGAATAAAGCATTGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAGTATGAAGTTGCTTTACAAGTAGCACCAGACACACCTTCGTCTGCGGAAATACGGTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAGGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTTGTGAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCCATTGCTGGTGAGTTCAAATTTTACAATCGGGTAGAGGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACTATTAGGCGCCTAGAGCCCCTTGCTGCAGAAAAGCGGGAAAAAATGAAGGAGGAAATGATTGCAAAACTGAAAGATATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 882 0.4649 MVVIEQEESEHRNASPSNAAGAANDASDGFETASEADLGSDDDGGDGGADRQEEQNHPEKHHRQQQTEQQPEHDIPQSTTESSENSLITEESSDNALLTEESSENKALDQANEAKVEGNKLFVDGKYEEALSQYEVALQVAPDTPSSAEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIAGEFKFYNRVEDMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02013 293 SUPERFAMILY TPR-like 109 239 IPR011990 GO:0005515
Lapu1g02013 293 MobiDBLite consensus disorder prediction 1 113 - -
Lapu1g02013 293 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Lapu1g02013 293 SMART tpr_5 152 185 IPR019734 GO:0005515
Lapu1g02013 293 SMART tpr_5 111 144 IPR019734 GO:0005515
Lapu1g02013 293 SMART tpr_5 186 229 IPR019734 GO:0005515
Lapu1g02013 293 Pfam Tetratricopeptide repeat 154 183 IPR001440 GO:0005515
Lapu1g02013 293 Gene3D Tetratricopeptide repeat domain 65 259 IPR011990 GO:0005515
Lapu1g02013 293 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Lapu1g02013 293 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 293 - -
Lapu1g02013 293 MobiDBLite consensus disorder prediction 70 105 - -
Lapu1g02013 293 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02013 Lapu-Chr1 33901458 33906583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02013 69 252 Calmodulin-binding Proteins AT3G25230 35.714 6.60e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02013 K24926 - gmx:100808386 391.734