Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02012 ATGTTGAGAGTTCAGAGCTTCAACGATTCGTCAATGGCAGAAAGGTTGGAGGATGGTTTGAATGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGAGAGCATACGCAATTCGACGGCTCGAAGGAATCTGAACTTCTTCTCATGCGGGACGGGTAACCCAATCGACGACTGCTGGCGGTGCGACAGGCGGTGGTACCTCCGGCGAAAGCGGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCGATTGGCGGGCGCGACGGCCGCTACTACGTGGTGTCGAACCCGAACGACGACGACCCGGTGAACCCGAAACCCGGGACGCTCCGGCACGCCGTGATCCAGGACCGTCCCCTGTGGATCGTCTTCAAGAGAGACATGGTGATAACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGTGAACGTCCACATCGCCTATGGCGCCTGCATCACCATCCAGTTCATCACCAACGTCATCATCCACGGCCTCCACATTCACGACTGCAAGCCCACCGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTATGGATGGAGAACGATCGCCGACGGGGATGGCATCTCCATATTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCAGTTGCGCTGATGGACTTGTCGACGCCGTTATGGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTGATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGATGCAGACACGGGTATTTCCACGTGGTTAACAATGACTACACCCACTGGGTAATGTATGCAATTGGTGGCAGTGCTGACCCCACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTGTGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTAGATACTGGTGCATCCATATGGAAAAGCTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTCAATGGAGCCTTTTTTACTTCTTCAGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCGTCTTCTTTGGTGGGTACCCTTACTTCTGGAGCTGGTGTTCTTAGCTGTCGCAGGGGTAACATGTGTTAA 1218 0.5353 MLRVQSFNDSSMAERLEDGLNEHAVDNPEEIASMVDESIRNSTARRNLNFFSCGTGNPIDDCWRCDRRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVSNPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWIDHNSLSSCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTGASIWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLSCRRGNMC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02012 405 SUPERFAMILY Pectin lyase-like 34 399 IPR011050 -
Lapu1g02012 405 Gene3D - 56 398 IPR012334 -
Lapu1g02012 405 PANTHER PECTATE LYASE 18-RELATED 25 403 IPR045032 GO:0030570
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Lapu1g02012 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lapu1g02012 405 SMART amb_all 131 328 IPR002022 -
Lapu1g02012 405 FunFam Pectate lyase 56 398 - -
Lapu1g02012 405 Pfam Pectate lyase 140 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02012 Lapu-Chr1 33878721 33883770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02012 5 405 Polysaccharide Lyase AT4G13710 79.462 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02012 K01728 - gmx:100790659 769.615