Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02010 ATGTCGGGAAGAAGGTCAAAGTTCTCTCAGACTCAGATCAATGACCTTGTGTCTAGGTTGCAACTACTTCTTCCCCAAATGAACCAAAGAGATGACAACGAAAGGCAATCAGCCTCAAAGATCTTGAAAGAAACCTGTTGTCACATTATGAGATTAAAGGAAGAGGTGGAACAACTGAGTGAGAGACTATCAGAACTCATGGATTCTGTGGATATCAATGACATTGATAGACAAATTTTACAAAACATTTTGCAACAATGTTAA 264 0.3826 MSGRRSKFSQTQINDLVSRLQLLLPQMNQRDDNERQSASKILKETCCHIMRLKEEVEQLSERLSELMDSVDINDIDRQILQNILQQC* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02010 87 Coils Coil 42 69 - -
Lapu1g02010 87 Gene3D - 10 87 IPR036638 GO:0046983
Lapu1g02010 87 PANTHER DNA BINDING PROTEIN 5 86 IPR044172 -
Lapu1g02010 87 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 70 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02010 Lapu-Chr1 33863681 33867461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02010 7 84 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 43.590 1.06e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g02010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02010 - - cam:101497180 113.62