Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02007 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAACCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCATCCTCACCCTCACCTGCACCACCTTCACTATGTTCTTCTCTTTGTACTTCTTGTTCCTCTTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCATAGCTCTTCCAAAACTCCTTCGGCCTTTTCTAGTTGGAACCCTTTGGACTCCAATCCGTGCAGTTGGTCTTACATCAAATGCTCTTCAGCAAACCTTGTCATAGAGATAACCATTCAAAATGTTGAGCTAGCCCTTCCCTTCCCTTCGAAAATCTCATCCTTTCCTTTCCTTCAAATATTGGTCATTTCTGGGGCTAACCTCACTGGGGCTATCTCACCTGACATTGGAAACTGTTCTGAGCTTATAGTCCTTGACCTTGGCTCCAATAGTCTTGTGGGTGGCATTCCTTCAAGTATTGGGAGGCTCAAAAACCTCCAAAACTTGAGCTTGAACTCCAACCATCTCACAGGACCAATCCCAAGTGAGCTAGGTGATTGTGTCAATCTCAAGACCCTTGACATATTTGATAACAGTCTTAGTGGGGATCTTCCAGTGGAGCTTGGAAACCTGTCAAATCTGGAGGTCATAAGAGCAGGAGGGAACAGTGGCATTGTGGGGAAGATTCCTGATGAGCTAGCAGATTGCAGAAATTTGACAGTGTTGGGTCTTGCTGACACAAAAATTTCTGGTCCATTGCCTGCTTCACTAGGCAAGCTAAGTATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCACAGCTCGTCAACTTGTTTTTGTATGAGAATGACCTCTCTGGTTCCCTGCCAAGAGAGATTGGTATGCTTCAGAAGCTGGAAAAGATGCTCCTGTGGCAAAACAATTTTGTTGAGGACATTCCTGAGGAAATTGGCAACTGCAGAAACTTGAAGATTCTTGATGTCTCCTTAAATTCTCTCTCTGGTGGAATACCCCAAAGTTTGGGGAAACTCTCAAATCTCGAAGAACTTATGCTGAGTAACAATAACATCTCCGGTTCAATACCACCAGCTCTGTCCAATCTCACAAACCTCATACAGTTGCAATTGGATACAAATCAGCTATCAGGTTCAATTCCACCTGGGCTTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCTTCGTTGGGAGGTTGTAGAAGCCTCGAGGCTTTGGATTTGTCATACAATGCACTCACAGATAGCTTACCCCGGGGCCTGTTTAAACTTCAAAATCTAACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGCAATTGCAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCAAGAGAAATTGGCTTCCTTAGCAGCCTTTATTTCCTTGATCTGTCAGAAAATCAGCTGACTGGGTCAGTACCACTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCTCTTTCCGGCGCTTTGCCTAGTTATTTGTCTTCCCTCACAAGGCTAGAGGTCTTGGATGTTTCTACGAATAACTTTTCTGGTGAGATTCCTATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTCAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAATTTCTCAGGGAGCATTCCACCAGCACTGCTTCAAATTGAAGCACTTGATATTTCTCTTAATCTTAGTCACAATGCCTTATCAGGAGTGATCCCGCCAGAGATTTCTTCTCTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGATAGCCTTTTCAGGGCTCGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTTCCAGACTGCAAGTTATTCCACCAACTATCAGAAACTGATTTGGATGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAATGCTGCTATGACAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAGAGATAATCAAAGTGGCTATTGGACTACTCAGTGCCTTGATTGTTGCAATGGCAATCTTCGGAGCTGTTACTGTCTTTCGAGCAAGGAAAATCATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTTCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGTTCAGGGATTGTTTATCGCGCTGAAATGAAAAATGGGGATATCATTGCTGTGAAAAGGCTATGGCCAACAACAATAGCTGCAAAATATGATAATCAAAGTGACAAGTTAGCAGTTAACGGAGGAGTACGCGATTCCTTCTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAAAACATTGTAAGGTTTTTGGGTTGCTGTTGGAACAGAAACACAAGGTTGCTTATGTACGATTACATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGCAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTCTGGCCTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTAGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTACGGGTACATGATGAAAATAACAGAGAAAAGTGATGTTTATAGCTATGGCATTGTTGTACTAGAAGTCCTAACAGGGAAGCTACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTGAGACAGAAAAGAGGAGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGGCCAGAATCTGAAATTGAGGAAATGTTGCAGACCTTAGGAGTAGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCCACCATGAAAGATGTTGTAGCAATGATGAAAGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGAAAGAAACCTTCCTAATGAAGAACCAATGTCTATGATAAGCACCAGCAGCAAAAATCTGCATCTGCATTACTCTCCCCATCGCTCTCAAACACCAAAGTAA 3465 0.4297 MLVVEFLRELPMSMPRQTLSNQNHNQMSRQAFITNHHHHPHPHLHHLHYVLLFVLLVPLSFAANDEVSALVSWMHSSSKTPSAFSSWNPLDSNPCSWSYIKCSSANLVIEITIQNVELALPFPSKISSFPFLQILVISGANLTGAISPDIGNCSELIVLDLGSNSLVGGIPSSIGRLKNLQNLSLNSNHLTGPIPSELGDCVNLKTLDIFDNSLSGDLPVELGNLSNLEVIRAGGNSGIVGKIPDELADCRNLTVLGLADTKISGPLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSQLVNLFLYENDLSGSLPREIGMLQKLEKMLLWQNNFVEDIPEEIGNCRNLKILDVSLNSLSGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPGLGSLTKLTVFFAWQNKLEGGIPSSLGGCRSLEALDLSYNALTDSLPRGLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPREIGFLSSLYFLDLSENQLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSTNNFSGEIPMSIGQLTSLLRVILSRNSFSGPIPSSIGQCSGLQLLDLSSNNFSGSIPPALLQIEALDISLNLSHNALSGVIPPEISSLNKLSVLDLSHNNLEGDLIAFSGLENLVSLNISYNKFTGYLPDCKLFHQLSETDLDGNQGLCPNGHDSCFVSNAAMTKMLNGTNSKRSEIIKVAIGLLSALIVAMAIFGAVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMKNGDIIAVKRLWPTTIAAKYDNQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKLPIDPTIPDGLHIVDWVRQKRGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLHASSANDQQERNLPNEEPMSMISTSSKNLHLHYSPHRSQTPK* 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02007 1154 Pfam Leucine rich repeat 347 407 IPR001611 GO:0005515
Lapu1g02007 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 318 426 - -
Lapu1g02007 1154 FunFam Predicted protein 220 317 - -
Lapu1g02007 1154 Gene3D Phosphorylase Kinase; domain 1 796 902 - -
Lapu1g02007 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 903 1113 - -
Lapu1g02007 1154 ProSiteProfiles Leucine-rich repeat profile. 661 683 IPR001611 GO:0005515
Lapu1g02007 1154 ProSiteProfiles Leucine-rich repeat profile. 372 395 IPR001611 GO:0005515
Lapu1g02007 1154 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 63 219 - -
Lapu1g02007 1154 SMART LRR_typ_2 659 681 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 514 538 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 322 346 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 370 393 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 682 704 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 442 466 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 586 610 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 394 418 IPR003591 -
Lapu1g02007 1154 SMART LRR_typ_2 177 201 IPR003591 -
Lapu1g02007 1154 Gene3D Ribonuclease Inhibitor 267 361 IPR032675 -
Lapu1g02007 1154 Gene3D Ribonuclease Inhibitor 362 462 IPR032675 -
Lapu1g02007 1154 SUPERFAMILY RNI-like 159 513 - -
Lapu1g02007 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 444 731 - -
Lapu1g02007 1154 SMART serkin_6 812 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02007 1154 MobiDBLite consensus disorder prediction 1117 1154 - -
Lapu1g02007 1154 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 795 902 - -
Lapu1g02007 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 947 959 IPR008271 GO:0004672|GO:0006468
Lapu1g02007 1154 SUPERFAMILY L domain-like 460 720 - -
Lapu1g02007 1154 Gene3D Transferase(Phosphotransferase) domain 1 903 1119 - -
Lapu1g02007 1154 ProSitePatterns Protein kinases ATP-binding region signature. 818 850 IPR017441 GO:0005524
Lapu1g02007 1154 Pfam Protein tyrosine and serine/threonine kinase 815 1093 IPR001245 GO:0004672|GO:0006468
Lapu1g02007 1154 PRINTS Leucine-rich repeat signature 517 530 - -
Lapu1g02007 1154 PRINTS Leucine-rich repeat signature 659 672 - -
Lapu1g02007 1154 SUPERFAMILY Protein kinase-like (PK-like) 795 1095 IPR011009 -
Lapu1g02007 1154 ProSiteProfiles Protein kinase domain profile. 812 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g02007 1154 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 313 1094 - -
Lapu1g02007 1154 Gene3D Ribonuclease Inhibitor 65 174 IPR032675 -
Lapu1g02007 1154 Gene3D Ribonuclease Inhibitor 467 731 IPR032675 -
Lapu1g02007 1154 Pfam Leucine rich repeat N-terminal domain 63 103 IPR013210 -
Lapu1g02007 1154 Gene3D Ribonuclease Inhibitor 175 266 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02007 Lapu-Chr1 33792022 33796044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02007 61 1146 Receptor kinase-like Gene Family AT5G56040 47.459 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu1g02007 PK_Tyr_Ser-Thr 3.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02007 - - gmx:100794698 2033.45