Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02006 ATGGAAGATGAACACACTTTGTCCGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGACGAGTTTCTAGGTGTCAATGACCCGTCCATGTTCTACGCTGATTTTCCCCCTCTCCCTGATTTTCCTTGCATGTCGTCATCATCATCTTCATCTTCTGCACCACCACTTCCTGTGAAAACCATGACATGTTCCACTACAACCACAACCACCACCACCACCTCCTCTTCTTCCTCTTCCTCTTCATGGGCAGTGTTGAAGTCAGATGTTGAGGAAGATGTAGAAAAAGGCTACATGCATGACCAATTTGATGCAACCGCTTTGTCTTCCACTGCTTCCATGGAGATTTCCCAACAGCAAAACCCTGATCCTGGCCTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAAGCAAATGATTTCTTCGATCCTGCCTCAATCTTTCAGAATGAGGAAAGCCAAAATCCTTTAGTGGAATTTGGCACACTGGAGGAACATGTGTCACTGCAAGAGGAGCAACATGAAATGGTTCATCAACAAGAGAACATAGAAGAGGATCGAAAGGTTCCTGTCTCTGGAGAGATCAAAGGAGAGGGAAAAGGTGGTGTAGTACTAGTAGACGATGAAATGAGTAGTGTCTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCAACGATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCCATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGTCATCTTCAGAATAAACGGCGCAAGGAGAATAGTGGCAACAACAGTGCCCTTCAGGCACCGATTCAGGATCCAAGTGGCCAGAACAACCAGAACACACACACTAGTGGCTCATTTGCACCTGAATCAAACTCTTGTTTCAACAACCAAACCCCCTGGTTGAATCCTCAAACATTTGGAACAGATCAGGCCCCTCTCATGGTTCCATCACAGCCATATTCACAACCAATTGTTGGGTATATGGGTGACCCTTATACTAGTGGCTCTGCTTCAAATAACATCACACCCACTCATAACCATAGCAACAACCCTTACCAACCAGGCACGGACCAATATCACATGTTGGAGTCAGCACATTCATGGCCTCATGCTCAGTTCAATGCTGCTTCTCATTATAGCCAGTCTTTTGGGGAAAATGGTCTTTTCACACATGGGGGTTTTGGCGGCTATGGCAATAACCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGGTTAGGTCCCTCTGCTACCAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAACCACAATAGCAATCACCACCAGAATCAAGGATCTGAGCCCCATGCAAGACTGGGAAGTGATAATTGCACCACAGGTTTGGTTGCACCACATCAAGCAAATTCAGCAGCAGCTAATTGGATGTACTGGCAGGCTATGACGGGTGGCCCGGGTGGTCCTCTGGCACCGGTGGTTCCGGCGGATCCGCTGGCCGGACAACCGATGGTGGACCGGTCCACCATGCACACACAGAATTCTCATCAGAATCGAGCTGCATCAGACAGGAGACAGGGTTGGAAACCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGACGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCTAACAACAAAAGCAGAATGTATTTGCTCGAGAACACCGGTGACTTTGTGAGAGCAAATGGACTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGATCAAAAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGACTAATGCATCAAATACAGCTGGAACTGTTGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2169 0.4624 MEDEHTLSVAEREMWLNSDQDEFLGVNDPSMFYADFPPLPDFPCMSSSSSSSSAPPLPVKTMTCSTTTTTTTTTSSSSSSSSWAVLKSDVEEDVEKGYMHDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFQNEESQNPLVEFGTLEEHVSLQEEQHEMVHQQENIEEDRKVPVSGEIKGEGKGGVVLVDDEMSSVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSGNNSALQAPIQDPSGQNNQNTHTSGSFAPESNSCFNNQTPWLNPQTFGTDQAPLMVPSQPYSQPIVGYMGDPYTSGSASNNITPTHNHSNNPYQPGTDQYHMLESAHSWPHAQFNAASHYSQSFGENGLFTHGGFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRNHNSNHHQNQGSEPHARLGSDNCTTGLVAPHQANSAAANWMYWQAMTGGPGGPLAPVVPADPLAGQPMVDRSTMHTQNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPEIKKAGKSQKNQHGTNASNTAGTVANNGRSSPPKPKAEKK* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02006 722 MobiDBLite consensus disorder prediction 288 325 - -
Lapu1g02006 722 CDD BfiI_C_EcoRII_N_B3 572 673 - -
Lapu1g02006 722 MobiDBLite consensus disorder prediction 681 722 - -
Lapu1g02006 722 SUPERFAMILY DNA-binding pseudobarrel domain 573 669 IPR015300 -
Lapu1g02006 722 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 227 687 IPR044800 GO:0003700
Lapu1g02006 722 Gene3D - 570 688 IPR015300 -
Lapu1g02006 722 MobiDBLite consensus disorder prediction 479 497 - -
Lapu1g02006 722 SMART B3_2 574 676 IPR003340 GO:0003677
Lapu1g02006 722 FunFam B3 domain-containing transcription factor FUS3 570 684 - -
Lapu1g02006 722 Coils Coil 180 200 - -
Lapu1g02006 722 Pfam B3 DNA binding domain 575 671 IPR003340 GO:0003677
Lapu1g02006 722 MobiDBLite consensus disorder prediction 470 497 - -
Lapu1g02006 722 MobiDBLite consensus disorder prediction 691 712 - -
Lapu1g02006 722 MobiDBLite consensus disorder prediction 45 84 - -
Lapu1g02006 722 ProSiteProfiles B3 DNA-binding domain profile. 574 676 IPR003340 GO:0003677
Lapu1g02006 722 MobiDBLite consensus disorder prediction 282 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02006 Lapu-Chr1 33775452 33778377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02006 12 693 B3 DNA Binding Superfamily AT3G24650 48.427 3.85e-167 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu1g02006 B3 3.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02006 K09287 - gmx:100795226 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02006 1 33775452 33778377 Lapu1g02006 1 33775452 33778377 ECH