Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02003 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCCACAGCAACCAAATCATCAGCAGCAAGGGAACAACACTGCTGTAAGCTCCCACCTTATTCTTCCACCACCAATACAGCCGCCGCCGCCAGCTCCACCATCACAACCCCATGGACTCGGTGGTAGTACTACCGCTGGGTCCATCAGGCCAGGTTCTATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCTACAAAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACACGTGGCGGGGCCTTGAGGAACGTCCCTGTCGGCGGCGGATGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCGGCAAACTCCGATCGCCAAACGGCAAGTGCCGGCTCCGCTTCCACAACAAGTGGCTCCTCTTCTGCTGACATGATGGCAGGCCTTGGCGGCCCAGGAGTGCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTTGGTGGTGGTGGTGGTGGAGGAGAAATAGGGTTAAACTATGGCTTGAACTATGGCGCAATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATAGGAAGTGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAGACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTTCCATTAAGGTTTCAACTTCTGGGGTGATATCTCAGTTTGCTTCAGTTAAAATGGAAGATAACCATCCGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGGTGGTGCCAATTCTGCTTGGAATGATCTTTCTGCTTTTAGTTCTTCTTCCACTACTAGTAACCCACTATAG 1095 0.5123 MVYTSIPAYIDPANWQPQQPNHQQQGNNTAVSSHLILPPPIQPPPPAPPSQPHGLGGSTTAGSIRPGSMADRARMANIPMQEALQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMMAGLGGPGVPSSLRFMAPLHHLGDHHLGGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGSALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTSIKVSTSGVISQFASVKMEDNHPELGLPRQFLGVNNNPNTNEQYWSGGGGGGANSAWNDLSAFSSSSTTSNPL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02003 364 MobiDBLite consensus disorder prediction 37 52 - -
Lapu1g02003 364 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Lapu1g02003 364 MobiDBLite consensus disorder prediction 129 178 - -
Lapu1g02003 364 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Lapu1g02003 364 MobiDBLite consensus disorder prediction 12 35 - -
Lapu1g02003 364 MobiDBLite consensus disorder prediction 12 67 - -
Lapu1g02003 364 MobiDBLite consensus disorder prediction 139 174 - -
Lapu1g02003 364 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 166 IPR045174 GO:0003700|GO:0006355
Lapu1g02003 364 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02003 Lapu-Chr1 33684792 33686577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02003 1 357 C2C2-Dof Transcription Factor Family AT2G37590 41.114 8.54e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu1g02003 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02003 - - gmx:100796820 521.931