Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02002 ATGGCGGAAACCGACCCTTCGTGGGCGCTCCGTAACCTCACCCGCGTCGCCACCCAAATCTGCAACCTCTCCGCCTTCAAGCCCCTGCTCAGGACCCAATGCTGCGACCTCGTTCGCCGCATACGCTTTCTCGCTCCTCTCTTCCTCGAATTGCGCGAGGACGTCGTGTTGAGTGGTTCCGATTCCTTCCACGTTCTCCTGGACGCGCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCCACCCGGGGAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAGCACAGATTCACCGATGTTGCTGTTCGTTTTGAACATGCTCTAAGCAAGATCTCCTTTGACGAGCCTGATGTTTCTGAAGAAATCAAGGAACAGGTTGAACTTGTGACCACTCAGTTTAGAAGAGCTAAACGGCAGTTTGATCCACCGGGTCTTCAGCTTTATGAACAACTTTTGTCTGTTTACAACCACAGCTATGATGTGAATGCCGAAACTGCTGAACTACGTTTAATATGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTACAAAAGATGGTTGTAGAGAGGGGGGATCATTCTCAGAAAAGCATACAGGATATGTCGTTAGTTGTGCTAAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACAATATTGTGTCACCAAGTGAGGATTTATTTCAACATACTGATGAGTCACATGTGAAACTATGTCCGCAATCACTGGTTATACCTGACGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATAATTTGCACAGGACAGACATATGAACGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCCAGTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGATAGGGAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCCTCGAGTGATATTGAGGATCAACGATGTGCTGCAGGGGAGCTCCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATGCTAATTGCTGAAGCTGGTGCTATACCCCGCCTTGTTCATGTCCTCTACACACCTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGATAATAAAGAGCGCATCATGGCTTCTGAAGCTGTGCCAGGCATCCTTCATGTGCTTGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTGGGGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTCAAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGAGCTGGAATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGAGGGACGAGGCATTGGCAATAATGGCTGTATTAGGTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTAATCAGTAGTGGATCTCCTAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCGCTACACTTGTCAATTGTCAGTTCGCCTAGGGTGATCAATCCTCTCTTGGATCTGGCAGAAAATGGTTCGGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTGATAGGAAATCATTGTGAACATACTATAAAAACTTCAGACTAG 1914 0.4556 MAETDPSWALRNLTRVATQICNLSAFKPLLRTQCCDLVRRIRFLAPLFLELREDVVLSGSDSFHVLLDALFKARDLLQFATRGSQVFMILDREQVKHRFTDVAVRFEHALSKISFDEPDVSEEIKEQVELVTTQFRRAKRQFDPPGLQLYEQLLSVYNHSYDVNAETAELRLICEKLQFINVDDVKQESLALQKMVVERGDHSQKSIQDMSLVVLKKIQDFLMVESGNNIVSPSEDLFQHTDESHVKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSSPILIPNHALYGLISSWCEANGVEPPKRIGNLWLCKTTSDGSSELVDLDILVSKLSSSDIEDQRCAAGELRLLAKQNGQNRMLIAEAGAIPRLVHVLYTPDAGTQEHAVTALLNLSIYADNKERIMASEAVPGILHVLENGSMEARENAAATFFSLSGVDENRVAIGASGAIQALVTLFCEGSQRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAVLGSHPDGKAAIGSLNVVSTLVELISSGSPRNKENATSVLVLLCHGDPLHLSIVSSPRVINPLLDLAENGSERARRKAGQLLELIGNHCEHTIKTSD* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02002 637 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Lapu1g02002 637 Coils Coil 121 141 - -
Lapu1g02002 637 PANTHER U BOX DOMAIN-CONTAINING 31 625 - -
Lapu1g02002 637 SUPERFAMILY ARM repeat 351 626 IPR016024 -
Lapu1g02002 637 CDD RING-Ubox_PUB 256 308 IPR045210 -
Lapu1g02002 637 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Lapu1g02002 637 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Lapu1g02002 637 SUPERFAMILY RING/U-box 255 331 - -
Lapu1g02002 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515
Lapu1g02002 637 Gene3D - 349 468 IPR011989 -
Lapu1g02002 637 Gene3D - 9 116 IPR036537 GO:0007166
Lapu1g02002 637 Gene3D - 469 635 IPR011989 -
Lapu1g02002 637 SMART arm_5 381 421 IPR000225 GO:0005515
Lapu1g02002 637 SMART arm_5 422 462 IPR000225 GO:0005515
Lapu1g02002 637 SMART arm_5 545 585 IPR000225 GO:0005515
Lapu1g02002 637 SMART arm_5 463 503 IPR000225 GO:0005515
Lapu1g02002 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Lapu1g02002 637 Pfam Armadillo/beta-catenin-like repeat 546 584 IPR000225 GO:0005515
Lapu1g02002 637 Pfam Armadillo/beta-catenin-like repeat 383 420 IPR000225 GO:0005515
Lapu1g02002 637 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Lapu1g02002 637 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Lapu1g02002 637 FunFam RING-type E3 ubiquitin transferase 338 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02002 Lapu-Chr1 33653599 33665810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02002 3 636 U-box Gene Family AT3G46510 49.216 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02002 - - vum:124836668 1103.2