Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01978 ATGAAGGATAGGCAACGTTGGAGAGCCGAGGAGGATGCTTTGCTACGCGCATATGTCAAGCAGTATGGTCCTAGAGAATGGAATCTGGTGTCTCAGCGCATGAACACAACTCTGAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTGATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTCCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTTAAAGAGAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCCTCGACCCAATTAACGATAGCAAGTACGAGCATATACTCGAGAGTTTTGCTGAGAAACTAGTGAAAGAAAGGCCTTCGCCATCATTTGTTATGGCTACTTCTAATAGTTCTTTTCTGCACACTGATCAACCGCCACCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCTAATGGCACTGCACCTGTGAGGCCACCTTCCCCTTCGGTGACTCTCAGTCTCTCTCCCTCCACGGTGGCGGCGCCACCTCCATGGATGCAACCTGTGAGAGGACCAGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCACCTCATGGAGCTGTTCTAGCATTTGGTGAAAACATGGTCATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCGGCGCACAAGAAGGAGGCGGCGTGGCGGTTAAGCCGGGTGGAGCTGCAGTTGGAGTCGGAGAAGGCTGGGCGAAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATCAAAGCTTTGAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTGACAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCGGCAAAACACATGCGCCTCACCAAATTTCTAGAACAGGTTGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG 1071 0.4958 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTLDPINDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDQPPPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWMQPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKIKALREEQTAALDRIEAEYREQLTGLRRDAESKEQKLAEQWAAKHMRLTKFLEQVGCRSRLSEPNGR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01978 356 Coils Coil 266 303 - -
Lapu1g01978 356 Gene3D - 4 58 - -
Lapu1g01978 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Lapu1g01978 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lapu1g01978 356 CDD SANT 6 53 IPR001005 -
Lapu1g01978 356 Coils Coil 305 329 - -
Lapu1g01978 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lapu1g01978 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lapu1g01978 356 Gene3D - 62 123 - -
Lapu1g01978 356 FunFam MYB-related transcription factor 4 58 - -
Lapu1g01978 356 Pfam Myb-like DNA-binding domain 7 67 - -
Lapu1g01978 356 CDD SANT 63 104 IPR001005 -
Lapu1g01978 356 SMART sant 58 106 IPR001005 -
Lapu1g01978 356 SMART sant 3 55 IPR001005 -
Lapu1g01978 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
Lapu1g01978 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01978 Lapu-Chr1 33322172 33325355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01978 1 347 MYB Transcription Factor Family AT2G37630 65.753 1.24e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01978 Myb_DNA-bind_6 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01978 K09422 - gmx:100819082 655.595