Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01970 ATGGTTGAGTCAGCCATGTCAAAGACAATGATGGAGGAAGTAATGGCCGCTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAGAGAGCTCTTGGATGATGGGTCTCCCCTGCTTATGCTGCCACAGGAGGCAATTGAACCCCCCGTCACAAAAGCCTCTTCAAGTGACCATGCCTTTAATAGGTTCATCTCCAACATTTACTCAGGACCTACTATCTCAGATATTGAAAATGCTTTGTCAGTGACCAACCAAAGAGACCTCTTCCCACCACTCTCATCACCCAGAGTTTCCATATTGGAGAGGGGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGAATGGGAGATGATGGATATAAGTGGAGGAAGTATGGCCAGAAATCCATTAAGAATAGCCCAAATCCAAGCAGGAGTTACTACAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTCGAGAGATCCATTGAGGACCCAGATACTCTTATCATAACCTATGAAGGGCTACACTTGCACTTTGCTTACCCATATTTCCTCATGGGCCAACCACACCAATCTCATTCCCATCCACCCGTCAAGAAGTCCAAGCCCACTTCTTCACAGGACCAAGCCCAAGACCAGGACCAAGCCCAAGCCCATAGAGCAGATTATGTTCACGAAGCCCAGGAAGTTCAATCAAATGCCACTTCGGGTGTGATGCCATCCACTTCATTGGAGTCTCCACAAAACATGGCCCAAGAAAACTTGGGCTCACAAGGGCTGCTTGAAGATATGGTACCGTTCATGGTTCGAAACCCAGCAAACAGTGTGAATAGTGCTCACGCAAAATTTTCTTGTTCTTCGTATCGTTCTCCTCCAACGTCACCTTTGTGGAGTTCTAATTACTCCACTTCCTTCTACAACGTTGGCTTAAATTCTAGCAACTAA 954 0.4644 MVESAMSKTMMEEVMAAWSEGSEDDDLVRELLDDGSPLLMLPQEAIEPPVTKASSSDHAFNRFISNIYSGPTISDIENALSVTNQRDLFPPLSSPRVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPSRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPHQSHSHPPVKKSKPTSSQDQAQDQDQAQAHRADYVHEAQEVQSNATSGVMPSTSLESPQNMAQENLGSQGLLEDMVPFMVRNPANSVNSAHAKFSCSSYRSPPTSPLWSSNYSTSFYNVGLNSSN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01970 317 MobiDBLite consensus disorder prediction 231 249 - -
Lapu1g01970 317 ProSiteProfiles WRKY domain profile. 118 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01970 317 SUPERFAMILY WRKY DNA-binding domain 121 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu1g01970 317 MobiDBLite consensus disorder prediction 230 249 - -
Lapu1g01970 317 MobiDBLite consensus disorder prediction 201 219 - -
Lapu1g01970 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 211 IPR044810 GO:0003700
Lapu1g01970 317 MobiDBLite consensus disorder prediction 193 223 - -
Lapu1g01970 317 Pfam WRKY DNA -binding domain 124 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01970 317 Gene3D WRKY domain 119 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu1g01970 317 SMART WRKY_cls 123 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01970 Lapu-Chr1 33135719 33138792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01970 11 274 WRKY Transcription Factor Family AT5G43290 40.550 7.15e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu1g01970 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01970 - - gmx:100810459 494.197