Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01962 ATGGCATCCTTCGGATCTTCTTCTTCATACTGGTGCTACCGATGCAACCGCACCGTTAGGGTTTCCCTCGCTACAGAAACGCAGCGAGATCCTATCATTCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAAGAGCTCCACACGCCTCCCCACTCGCGTCGATCCACGCGCGCCGGGTCGCCCTTCAATCCCGTGATCGTGCTGCGCGGCGGGAACGGAAATGAAAACGCAAACGCAAACGAAAACGACGTCGCCTCGGGGAACTTCGAGCTCTACTACAACGACGGCGTTTCGGGTCCGGGACCGAGTGGCCTGCGCCCGCTGCCCGCGGGTGTGACCGACTTCCTCATGGGCTCGTCGGGCTTCGACCACTTGCTGGACCAGCTCGACGGCACCGCGGTGCGCCTCGACCGGGCGGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTCAAGATCCTGGCTAGCCACGCGCACGCGGAGTCGCACTGCGCGGTGTGTATGGAAAATTTTCAAGTGGATTGCGACGCACGTGAGATGCCGTGTGGGCACGTGTATCACTCGGAGTGCATCGTGCCGTGGCTCTCCGTGCGGAACTCGTGCCCCGTGTGCCGCCGCGTGGTTCCTTCCGATGAAGTGGATGATAACAATACGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGAGGTAGAGAACTGCCGCTCGTGTATACGGAGATGGACGGCGCGTTTAACGCCGCTAACGGCGTTCCCAGGAGAGTCTCCTGGGATTCGTCTATTGGTAGGTCTAGGGAGAGTCGGGGCTTTGGTTCTGCTTTTCGGAATCTCGTTTCGTATTTCGGAAGAGTTAGGAGTTCGTTTTCTCGTGGAACGAGAAACTCGCGTGTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTGGATCAAGATTTTAA 978 0.5859 MASFGSSSSYWCYRCNRTVRVSLATETQRDPIILCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIVLRGGNGNENANANENDVASGNFELYYNDGVSGPGPSGLRPLPAGVTDFLMGSSGFDHLLDQLDGTAVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVDDNNTMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNAANGVPRRVSWDSSIGRSRESRGFGSAFRNLVSYFGRVRSSFSRGTRNSRVNGRSRSATTIFSRFRSGSRF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01962 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 207 - -
Lapu1g01962 325 Pfam Ring finger domain 163 205 IPR001841 -
Lapu1g01962 325 SUPERFAMILY RING/U-box 144 211 - -
Lapu1g01962 325 FunFam E3 ubiquitin-protein ligase RNF181 131 211 - -
Lapu1g01962 325 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Lapu1g01962 325 SMART ring_2 164 204 IPR001841 -
Lapu1g01962 325 Pfam zinc-ribbon 8 46 IPR039525 GO:0061630
Lapu1g01962 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Lapu1g01962 325 Pfam Protein of unknown function (DUF1117) 219 316 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01962 Lapu-Chr1 33051470 33052495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01962 107 214 C3H Transcription Factor Family AT5G01980 41.818 8.44e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01962 K11982 - gmx:121172634 465.307